Scau009222.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010001592.1:305-2571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5e-05 0.00087 19.3 1.7 1 23 31 54 31 54 0.95 2 18 4.9e-07 2.9e-05 24.0 2.0 1 23 60 82 60 82 0.98 3 18 0.00016 0.0092 16.1 1.4 1 23 88 110 88 110 0.97 4 18 0.0079 0.47 10.7 2.0 1 23 116 139 116 139 0.95 5 18 0.00025 0.015 15.4 0.8 1 23 143 166 143 166 0.91 6 18 0.00037 0.022 14.9 0.8 1 23 172 195 172 195 0.98 7 18 3.4e-05 0.002 18.2 0.2 1 23 202 224 202 224 0.98 8 18 5.7e-06 0.00034 20.6 0.9 1 23 230 252 230 252 0.97 9 18 0.00014 0.0085 16.2 1.6 1 23 267 290 267 290 0.93 10 18 5.5e-07 3.2e-05 23.8 6.5 1 23 296 318 296 318 0.99 11 18 2.4e-06 0.00014 21.8 1.8 1 23 324 346 324 346 0.99 12 18 0.0002 0.012 15.7 0.1 3 23 354 375 352 375 0.92 13 18 1.4e-05 0.00085 19.4 2.7 3 23 381 401 379 401 0.95 14 18 0.015 0.87 9.9 3.9 2 23 412 434 411 434 0.96 15 18 0.00038 0.023 14.9 0.1 1 23 441 463 441 463 0.98 16 18 2.1e-06 0.00012 22.0 0.8 1 23 469 491 469 491 0.98 17 18 9.1e-07 5.4e-05 23.1 0.2 1 23 497 519 497 519 0.98 18 18 0.1 6.2 7.2 5.8 1 23 525 548 525 548 0.96
Sequence Information
- Coding Sequence
- ATGCAAGAAGACCTTCTTCCGCAGCGAAGGGCTGGAGAATCACGTGAAGAAGCATCTGGAAGACCAGCAGTTCATCTGAGCGAGGGAGTTTTCCAGTGCCCACAATGCCCGAAAATGTTCATCGATAGACGCAAACTCCACCGACATACAACTATCGTGCACTCGGAAAATCGTCCGTATTGCTGTGAAATTTGCGGGAAATCGTTCAAACAGCGCGCCGTTTTGAAGGTCCATCAAAACACCCATTTGGACGTGGCCAAATTCGATTGTGATATTTGCCAAAAGAAATTATCGTCGGCGTTCAGTTTACGAGAACATAAACGGCGCCATTTCAAcgattatcaatataattgcGAAAGTTGCCGTCAAAGTTTCATCTCGCATCAAGAATATAAAGTGCACATAAACGGCAAACATGGCCGGCCACATATCTGTGAGGATTGCGGCAAATCTTTCAATAGTGAAAAGAGCAAAAAGCTGCACATAGAGGCACTGCATGAAAAAGGGCGTAAATTTCAATGTGAATCGTGTCTGAAGATATTTTCGATGAAAGGCTATTTGGATACTCACATCAGGCGGATGCACAACGATAATCGACGGAAttatatttgtgatttatgCGGTAAAGTACTGACCACGACCTCAGGCTTGAAAGACCACAAAAATATGCATTTggatttgaagaatttcgattgTGAATTATGCGGGAAGAAATTCACCAAAAGAGCTGTCTTAAATATACATAGAAGAACGCATACTGGCGAAAAACCGTTGCAGCTAGCTTCGCTCGACTCCCACCATCAATGTCCGCTATGTTTGCGAGTATTCAAGAAAAAACCGCTACTGAGGCGCCATCTCCTGTTCGTACACACCGAAAATCGCCCATATTCCTGCAGTATTTGCAGTAAATCGTTCAAGCACAAAGACCATTTGAAGGTCCATCAGAACACGCACGATAAATCGACGAAATTCCAATGCGACATTTGCCAGAAAACTACCGCCACTTACAGTAGTTTGAAGTTGCATCAGCGCCGCCATTTGAAagattatcgaattaattgcGAGATTTGCGGACAAGGCTTCGTCTCGAAAGGCGGCTACAAGACCCACATGGAAGGGAAACATATCCGGACCCATTTGTGTAATATTTGCGGGAAATCCTTCTATAATAAACACGGTCTAGATCTACATATGAAACTGCACGAGGAAAATTATACGGAAAAGCGCGATATTAAATGCGAATTTTGCCCGAAAACTTTCCTACAAGTCCTCCATTTGAAACACCACATCAAACGGATGCACAACGAGAATCCGCAGAAATATATTTGCGATTTATGCGGTAAAGAGATCACAACTCTAAAAGGCTTGAGGGACCATAGAAATATCCATTTGGATGTGAAATCGTTTGAGTGTGGCACTTGCGGGAAGAAATTCGTCCGGAGATTGACTTTAGTGAACCATCTGCGGACTCACACCGGGGAAAAACCGTATATTTGTACCGTTTGTAGTAAGGCTTTCGCACAACAAAGTCCATTGACGATACATTTACGGACGCACACCGGGGAAAAACCGTATCGTTGCGATATTTGTCAAGAGAAATTCGTTAGTAAACACGCCTGTGATTATCACATGAAGaagaaacatcaaaaattataa
- Protein Sequence
- MQEDLLPQRRAGESREEASGRPAVHLSEGVFQCPQCPKMFIDRRKLHRHTTIVHSENRPYCCEICGKSFKQRAVLKVHQNTHLDVAKFDCDICQKKLSSAFSLREHKRRHFNDYQYNCESCRQSFISHQEYKVHINGKHGRPHICEDCGKSFNSEKSKKLHIEALHEKGRKFQCESCLKIFSMKGYLDTHIRRMHNDNRRNYICDLCGKVLTTTSGLKDHKNMHLDLKNFDCELCGKKFTKRAVLNIHRRTHTGEKPLQLASLDSHHQCPLCLRVFKKKPLLRRHLLFVHTENRPYSCSICSKSFKHKDHLKVHQNTHDKSTKFQCDICQKTTATYSSLKLHQRRHLKDYRINCEICGQGFVSKGGYKTHMEGKHIRTHLCNICGKSFYNKHGLDLHMKLHEENYTEKRDIKCEFCPKTFLQVLHLKHHIKRMHNENPQKYICDLCGKEITTLKGLRDHRNIHLDVKSFECGTCGKKFVRRLTLVNHLRTHTGEKPYICTVCSKAFAQQSPLTIHLRTHTGEKPYRCDICQEKFVSKHACDYHMKKKHQKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -