Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000688.1:22279-30408[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 7.1e-05 0.0042 17.2 3.7 1 23 293 315 293 315 0.98

2 26 0.064 3.8 7.9 2.2 1 23 320 343 320 343 0.93

3 26 0.00053 0.031 14.4 0.2 1 23 349 371 349 371 0.96

4 26 6.9e-06 0.00041 20.4 2.4 1 23 377 400 377 400 0.98

5 26 3.2e-05 0.0019 18.3 1.5 1 23 405 427 405 427 0.98

6 26 0.0034 0.2 11.9 4.5 1 23 436 458 436 458 0.98

7 26 0.00041 0.025 14.8 0.3 3 23 467 487 466 487 0.97

8 26 7e-05 0.0042 17.2 0.2 3 23 495 515 493 515 0.97

9 26 8.8e-07 5.2e-05 23.2 0.7 1 23 521 543 521 543 0.97

10 26 0.0041 0.25 11.6 1.2 1 21 549 569 549 570 0.94

11 26 0.64 38 4.7 1.3 1 20 584 603 584 605 0.93

12 26 0.014 0.8 10.0 1.9 3 23 613 633 611 633 0.97

13 26 1.2 70 3.9 1.1 1 21 793 813 793 814 0.94

14 26 0.15 8.8 6.7 0.2 3 23 822 843 821 843 0.94

15 26 0.014 0.82 10.0 1.5 3 23 849 869 848 869 0.97

16 26 0.0057 0.34 11.2 4.1 1 23 875 898 875 898 0.96

17 26 2.3e-05 0.0014 18.7 5.0 1 23 1024 1046 1024 1046 0.97

18 26 8.5e-05 0.005 16.9 0.7 1 23 1052 1074 1052 1074 0.97

19 26 1e-05 0.0006 19.8 5.0 2 23 1080 1101 1079 1101 0.97

20 26 0.002 0.12 12.6 0.4 3 23 1109 1130 1108 1130 0.96

21 26 0.0027 0.16 12.2 0.2 2 23 1136 1157 1135 1157 0.96

22 26 0.0021 0.12 12.6 1.3 1 23 1167 1190 1167 1190 0.95

23 26 5.8e-05 0.0034 17.5 0.2 1 23 1196 1218 1196 1218 0.98

24 26 2e-06 0.00012 22.0 1.2 1 23 1224 1246 1224 1246 0.98

25 26 7.3e-06 0.00043 20.3 6.6 1 23 1252 1274 1252 1274 0.98

26 26 0.00022 0.013 15.6 2.6 5 23 1283 1301 1280 1301 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	7.1e-05	0.0042	17.2	3.7	1	23	293	315	293	315	0.98
2	26	0.064	3.8	7.9	2.2	1	23	320	343	320	343	0.93
3	26	0.00053	0.031	14.4	0.2	1	23	349	371	349	371	0.96
4	26	6.9e-06	0.00041	20.4	2.4	1	23	377	400	377	400	0.98
5	26	3.2e-05	0.0019	18.3	1.5	1	23	405	427	405	427	0.98
6	26	0.0034	0.2	11.9	4.5	1	23	436	458	436	458	0.98
7	26	0.00041	0.025	14.8	0.3	3	23	467	487	466	487	0.97
8	26	7e-05	0.0042	17.2	0.2	3	23	495	515	493	515	0.97
9	26	8.8e-07	5.2e-05	23.2	0.7	1	23	521	543	521	543	0.97
10	26	0.0041	0.25	11.6	1.2	1	21	549	569	549	570	0.94
11	26	0.64	38	4.7	1.3	1	20	584	603	584	605	0.93
12	26	0.014	0.8	10.0	1.9	3	23	613	633	611	633	0.97
13	26	1.2	70	3.9	1.1	1	21	793	813	793	814	0.94
14	26	0.15	8.8	6.7	0.2	3	23	822	843	821	843	0.94
15	26	0.014	0.82	10.0	1.5	3	23	849	869	848	869	0.97
16	26	0.0057	0.34	11.2	4.1	1	23	875	898	875	898	0.96
17	26	2.3e-05	0.0014	18.7	5.0	1	23	1024	1046	1024	1046	0.97
18	26	8.5e-05	0.005	16.9	0.7	1	23	1052	1074	1052	1074	0.97
19	26	1e-05	0.0006	19.8	5.0	2	23	1080	1101	1079	1101	0.97
20	26	0.002	0.12	12.6	0.4	3	23	1109	1130	1108	1130	0.96
21	26	0.0027	0.16	12.2	0.2	2	23	1136	1157	1135	1157	0.96
22	26	0.0021	0.12	12.6	1.3	1	23	1167	1190	1167	1190	0.95
23	26	5.8e-05	0.0034	17.5	0.2	1	23	1196	1218	1196	1218	0.98
24	26	2e-06	0.00012	22.0	1.2	1	23	1224	1246	1224	1246	0.98
25	26	7.3e-06	0.00043	20.3	6.6	1	23	1252	1274	1252	1274	0.98
26	26	0.00022	0.013	15.6	2.6	5	23	1283	1301	1280	1301	0.94

Sequence Information

Coding Sequence: atggctaatatcaataatattatgcAATTTTGTCGTTTATGTTTAGTTAAAGAACAAGTTAATGTACCAATATTTGGTGAAAATAATAGACGAGAGATATCGGCGAAGATAAGTTCATGTCTGCCGGTTAAGATCTCTCCTGATGATAGTTTACCTAAAAAAATCTGTGATGATTGTTCCTACAAATTAGACATGTTGTATGCATTTAGAAATACTAGTATTAATtcagaaaaaatattatatcaATGGTTGGAACAAGCTGgtatttcaaaaacaacaacaacaacaattggaacaacatcaattacaacaacagacaatacaataattccatcaactacatcatcatcattaagtAATATTGTTAATGATGCAATAACAAAAGCAGAAGTTTCTGTTAAACAAGAGAAAACTGACTCAACTACCGGAAGTGAATTATCAGCTGAAACACAAgaatatttattacaacaacaaaagctCCCATATCAAGAAAGTTTTGGTGATTTCAGCAcgGAATCAAATGCTGAGACTGATGAACCATCTCGTAAAAAACCTAGACGAGCTGCAGCATTAAAACCACCAATTAAAGATCATGAAAGTGATACTGATCTGCCACCAACTAaagcCGAAGATGATAGTGATGATGTAGATGATGATTTAGGCGAAGCTggtattgatgatgatgatgatgaagatgaagatgataatgaaaatgaggAAGATGATGGTGTTGATAATCCTGAATTTGTTGATGTACCATCAACAAGTGCCGAAGAACAACCTGGACCATCTGGTGTTAATAAAGATCCCATCGCAGCACCgCAATCTAGTGGGCACGTCATCATATTATTGAAGACAACAATACCAAATCGAACTTATAAATGTAATACCTGTTCCCGTCGTTATTCATCACAAGCCAAACTACAAAAACACAAACGTCTACATAAAGAACGACTATATTCATGTCCGCATTGTCCAAAAAAATGGCGTTTTCCATATGAAGTCAAAAAACATGTACATCTTGTACATCAAACAAGAGAAACCTATAATTGTGATGTTTGTAGTAAAATTTTTCGTACACTATATGGTCTAGATCTACACATGGAAGGTCATAGAGgcgtttttaattataaatgtaataaatgtAATGCTAAATACAGACAACCACATCTATTACAAAAACATATTAGAGTTGAACATGAAGGTTTACGATTTCCTTGTGAACAATGCCAGAAAACTTTTCGCACAGAACAAGGCTATAAAATGCATATTAAAACTCATGATCCTGATTATACTAAAGAAACGTACACTTGTGAGGTTTGTAGTAAAGTATTGTCGCATAAACGATCTTTTTATTATCACATGAAAAATCATAATGGTAATATTGTTACTAATATGTGCGATATTTGTGGCTTACGTGTAACCACAAAAGCTAGCTTAATAAACCATTTCAAAACTCATTCCGATATTAAAGAAGTTATCTGTGATACTTGCGGAAAGGCTTACAAAAATGAGAGAAGTCTATTGATCCATAGACGTATCCATACGAATGAAAAACCATTCGCTTGTTCTTTGTGTAATAAAGCTTTTTCACAAAAAGGCACGTTAAACATCCATATGCGCTATCATACCGGTGAACGTCCCTATAAATGTGGCGTATGTTCTAAGGGCTTTGTAACCGGCACTTTATTGAGACGACATAAATGTTCTAACAAAAAATCTAAGAAAGAATCACAATCATCAGATAATCACACTTGCAATATATGTTTGCAAGAATTCCCAAATGGTGAGGAATTCGTTAAACATCATTTACATCAATATGGAGAGACTTTTGGTTGTTGTAAATGcggtaataaattcaaaacaatcacCGAATTATACGCCCATCTTGAAAcccataaaaatataattatcgaaGAACCAGACGATCATACAAATCATGAATACGTTGaagaaataatattgaattacgAAAATGAAGAAGTCGTCGAAATAGACGACAATAATCAAGAATTAGTTTATATATTAGACGATTCGCAATGTGTTAATGAAGTTGTTATAGAAGAAGATACAGATGGCgctacaacaacaactcaACAATCACCACAAACAATCGATAAACAAGACGATTTAGATGATGTTACAATAGTTCAATTAGAACATGGCTATGTAAAACCGGATGctatcgatattattaatggtaaacaaaagaatattagtataaataaaatacaaccaTCAACTAGTAAAGTACAATATGTTAATCAATCGAAAACAACTTCACGTATGCCACAACCGAAACGTCATATAGCACCCGATTTTTCCTCATCGAATTATATTCATGTTAATgcaaatgatgaaattgatattcCGCATTTCAAATGTTTACGTTgtgaacaattatttattagtaaatttgtatttttccgACATATCGAAAAAGGTAAATgttatatcaataattgtgatgTTTGTAGCGCTACATTTATGAAAAAtagtgaattttattatcattatattgttgaacatACTGATCGAGCTATATGTAATTTTTGCTTTAGAACATTTATGTATGAGAAAAATGTTAAAGAACATATGTTAAGGCATTTAGATCAATTCAGACATCGTTGTGATGAATGCAATAAAGGCTTTTATACAGTACGTGAATATcgaaatcattataaaaatcgaCATATGGGCATCAGACATACTTCACTATATCAACAACAGCAATTATACGAAGCTAACTACGACATGCCCAACAATATAAATCTGCAATGCAAATATTTAATGTCAGTTGTTGAAAATGAGAAACAAACGAATATTAATATTCTGGAAAATACAGTTGTGGatcaattgaatgaaacaGATGctgatattttaaatttattgacaaCTGAAGATGATTGTACCgccattttgaataatatcgctaataatgaacaattcgAACGTTTAATCAACATAAACGAAAcgaattttgttgatgaattgATCGAAggtgaaatcaaaaatattggaGATAATGACACGaatctatcatcatcatcatcatcaattgtgGCATCATTCAAATGTTATCAATGCAACAAGAGTTTCAAATcgaagaaattattgaagaaacaTCTATTCATCCATAGCGGTATAAGGAAGTTTGCCTGCGATATTTGCGGTAAATCGTTCAAATATCGCTATGAAGTCGATGTACACAAAAAAAGCCATAACACGCCGACTCTACAATGCGATATTTGTTCGAAAATGTTTATACATAAATCGCATTTGAATATACATCGGCGTAAGCATTTGAGCGAATTTGTAGCATTTTGTAAAGACTGTAATATTGGATTTGTGACgcaatttctttataaatcCCACATTAATCTCGTCcataaaaacatcaaattaataTGCGACATATGTGGATCCCGTCTCAGCTCATTATCATCACTCAAAGAACACAAATTAACTCATAATTCTAATTACGGTAAAGAACGCAATCATATATGCGAAATTTGCGGCAGAAGTTACCTAAATTTAAGAAATCTAAAATATCATATAAAAAATCTACATGAACGTATACGTTCATATGTTTGTAATATTTGTGGTAAATCGGTTAGTAGTAAACGTATATTAGAGACACATATCAAGATGCATACCGGTTTAAAGGATTTCGAATGTGAAATTTGCGATAAACGTTTCGCTTCTAAGGAGTATTTAGAATTACATCATCGGATACATAGCGGTAATAAGCCGTATTGTTGTGAATATTGCGGTAAGAGATTCACACAGAAAACATCGCTTACAGTCCATTTGCGCCATCACACCGGCCAAAGGCCCTATAAATGCGAATGCGGTAAAGAATTCACAACGAAAAGCCATTTGATGACGCATTATAAGGCCCACGATATTGGCGGGGTCGATATTGATTACATTTCAAAGCCTGTAacttga
Protein Sequence: MANINNIMQFCRLCLVKEQVNVPIFGENNRREISAKISSCLPVKISPDDSLPKKICDDCSYKLDMLYAFRNTSINSEKILYQWLEQAGISKTTTTTIGTTSITTTDNTIIPSTTSSSLSNIVNDAITKAEVSVKQEKTDSTTGSELSAETQEYLLQQQKLPYQESFGDFSTESNAETDEPSRKKPRRAAALKPPIKDHESDTDLPPTKAEDDSDDVDDDLGEAGIDDDDDEDEDDNENEEDDGVDNPEFVDVPSTSAEEQPGPSGVNKDPIAAPQSSGHVIILLKTTIPNRTYKCNTCSRRYSSQAKLQKHKRLHKERLYSCPHCPKKWRFPYEVKKHVHLVHQTRETYNCDVCSKIFRTLYGLDLHMEGHRGVFNYKCNKCNAKYRQPHLLQKHIRVEHEGLRFPCEQCQKTFRTEQGYKMHIKTHDPDYTKETYTCEVCSKVLSHKRSFYYHMKNHNGNIVTNMCDICGLRVTTKASLINHFKTHSDIKEVICDTCGKAYKNERSLLIHRRIHTNEKPFACSLCNKAFSQKGTLNIHMRYHTGERPYKCGVCSKGFVTGTLLRRHKCSNKKSKKESQSSDNHTCNICLQEFPNGEEFVKHHLHQYGETFGCCKCGNKFKTITELYAHLETHKNIIIEEPDDHTNHEYVEEIILNYENEEVVEIDDNNQELVYILDDSQCVNEVVIEEDTDGATTTTQQSPQTIDKQDDLDDVTIVQLEHGYVKPDAIDIINGKQKNISINKIQPSTSKVQYVNQSKTTSRMPQPKRHIAPDFSSSNYIHVNANDEIDIPHFKCLRCEQLFISKFVFFRHIEKGKCYINNCDVCSATFMKNSEFYYHYIVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHTSLYQQQQLYEANYDMPNNINLQCKYLMSVVENEKQTNINILENTVVDQLNETDADILNLLTTEDDCTAILNNIANNEQFERLININETNFVDELIEGEIKNIGDNDTNLSSSSSSIVASFKCYQCNKSFKSKKLLKKHLFIHSGIRKFACDICGKSFKYRYEVDVHKKSHNTPTLQCDICSKMFIHKSHLNIHRRKHLSEFVAFCKDCNIGFVTQFLYKSHINLVHKNIKLICDICGSRLSSLSSLKEHKLTHNSNYGKERNHICEICGRSYLNLRNLKYHIKNLHERIRSYVCNICGKSVSSKRILETHIKMHTGLKDFECEICDKRFASKEYLELHHRIHSGNKPYCCEYCGKRFTQKTSLTVHLRHHTGQRPYKCECGKEFTTKSHLMTHYKAHDIGGVDIDYISKPVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -