Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000336.1:11279-13228[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.6e-07 3.3e-05 23.8 1.1 1 23 119 141 119 141 0.99

2 15 2e-07 1.2e-05 25.2 0.9 1 23 147 169 147 169 0.96

3 15 3.2e-05 0.0019 18.2 5.2 1 23 175 197 175 197 0.98

4 15 2e-06 0.00012 22.1 1.9 1 23 203 225 203 225 0.96

5 15 0.0021 0.13 12.5 1.0 1 23 231 253 231 253 0.98

6 15 0.00032 0.019 15.1 5.4 1 23 259 281 259 281 0.97

7 15 1.2e-06 7.2e-05 22.7 1.1 1 23 287 309 287 309 0.98

8 15 7.4e-08 4.4e-06 26.6 1.7 1 23 315 337 315 337 0.95

9 15 1.1e-06 6.8e-05 22.8 2.1 1 23 343 365 343 365 0.98

10 15 8.6e-08 5.1e-06 26.3 1.3 1 23 371 393 371 393 0.98

11 15 2e-06 0.00012 22.1 3.2 1 23 402 424 402 424 0.97

12 15 3.3e-06 0.0002 21.4 1.1 1 23 430 452 430 452 0.99

13 15 6.1e-07 3.6e-05 23.7 0.2 1 23 458 480 458 480 0.98

14 15 1e-06 6.1e-05 23.0 1.4 1 23 486 508 486 508 0.98

15 15 6.3e-05 0.0037 17.3 2.2 1 21 514 534 514 535 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.6e-07	3.3e-05	23.8	1.1	1	23	119	141	119	141	0.99
2	15	2e-07	1.2e-05	25.2	0.9	1	23	147	169	147	169	0.96
3	15	3.2e-05	0.0019	18.2	5.2	1	23	175	197	175	197	0.98
4	15	2e-06	0.00012	22.1	1.9	1	23	203	225	203	225	0.96
5	15	0.0021	0.13	12.5	1.0	1	23	231	253	231	253	0.98
6	15	0.00032	0.019	15.1	5.4	1	23	259	281	259	281	0.97
7	15	1.2e-06	7.2e-05	22.7	1.1	1	23	287	309	287	309	0.98
8	15	7.4e-08	4.4e-06	26.6	1.7	1	23	315	337	315	337	0.95
9	15	1.1e-06	6.8e-05	22.8	2.1	1	23	343	365	343	365	0.98
10	15	8.6e-08	5.1e-06	26.3	1.3	1	23	371	393	371	393	0.98
11	15	2e-06	0.00012	22.1	3.2	1	23	402	424	402	424	0.97
12	15	3.3e-06	0.0002	21.4	1.1	1	23	430	452	430	452	0.99
13	15	6.1e-07	3.6e-05	23.7	0.2	1	23	458	480	458	480	0.98
14	15	1e-06	6.1e-05	23.0	1.4	1	23	486	508	486	508	0.98
15	15	6.3e-05	0.0037	17.3	2.2	1	21	514	534	514	535	0.94

Sequence Information

Coding Sequence: atGGCGGATTTTcgaatattagaaaattcgaaattatgtCGAACATGTTTCATGGAAAGTGAAAAATTGTATAACATTTtcgaattagaaaataattcatcatcgttaattgaaaaaatccaatattcCACTAATATTACGATTTggaaaaatgatgaattacCAAATTCTGTATGCGATGAATGTTGGTACAAGATTGATTTAGCATATAAATTCCGTAAACGTTATGAAGAAGTAGatggaatttttaaaaaattattagagcAGAAGAATTTAGAAGAATCTCAAATTGTTAGAAATGAaaacgaaattaatcaaaatactCCCATTGAATCCCATAAAACAGAAACTAAATATACTTGTAAGATTTGCAATAAACAGTATGTACAACAAAATGGTTTGACAACCCACATGCGAATCCATACAGGGGAAAGACCGTTCCTATGTAACCATTGCGGAAGAGGATTCATTAGATCTGATGATTTGTTGCGACATATCCGTGTACACACCGACGAACGTccttttatttgtaatatgtGTAAGAAAGccttcaaacaaaaattccatCTATCTGAACATAAACGTTCtcataaaaatgataaagaaTTCCTCTGCACCGATTGTGGTAAAAcTTTTACTCGCTATGGAGTTCTAAGAACACACAAACGTACGCACACCGGTCTTAAACCGTacatttgtaatatttgttgtaaatcTTTCGCTGGTTCAGATATTCTAATGCGACATATTAAAACTCACACCAACGAAAAACCATATAAATGCGAaGATTGTGGTCATTGTTTCAATCAATCAACTCGTTTAAAACTCCACAAACAAGCACATCTGAATCATAAGCGATACATTTGTGAAATATGCTCTAAAGTTTTTACCCAACAGCATGGTTTGAATATTCACAGATTGACTCATACAGGCGAAAAATCATTTTTGTGTGATATTTGCGGTAAATCGTTTATACGATCCGATGATTTGAAGAAACATCATCGGATTCATAGCAAAGAACGACCGTATGTATGCCAAATATGCTCAAAAACTTTCACACAATCATTTCATCTATCCGAACATATTCGTGCGCATCTGAAAGATCGTcTATTTTCTTGTAGTATCTGCAATAAGAGTTTCGCAAGAAATGGTTCATTACGATCTCATCTGAAAACCCATACTAGAGACTATATTGAGAAAAAGCACGAATGTCATATCTGTGGGAAAAAATTCAGCGTTAATTACTCGTTGAGTAAACACCTGTTGATACATACAGGTGAAAAACCATATCGATGCGACATCTGTTTCAAAggATTCACTCAATCGGGTCATTTAGGAGCCcatcaaaaaattcacaccGGCGAAAAGCCTTATATTTGTCAAATATGCGGTAAAGGATTCGTTGTAAGCTCACGACTTACAGTACATATGCGCAGTCATACTGGTGAAAAACCATATATTTGTACCATCTGTGGTAAAGGCtgtacaacatcaacaatgcTTAAAGTACATCAACGTATTCATACTGGTGAAACACCGTATCATTGTCCGAATTGTTCGAAATCATTTTCACGATCGGATCTTTTTAATATTCATAAGAAAAATTGtcaacttttataa
Protein Sequence: MADFRILENSKLCRTCFMESEKLYNIFELENNSSSLIEKIQYSTNITIWKNDELPNSVCDECWYKIDLAYKFRKRYEEVDGIFKKLLEQKNLEESQIVRNENEINQNTPIESHKTETKYTCKICNKQYVQQNGLTTHMRIHTGERPFLCNHCGRGFIRSDDLLRHIRVHTDERPFICNMCKKAFKQKFHLSEHKRSHKNDKEFLCTDCGKTFTRYGVLRTHKRTHTGLKPYICNICCKSFAGSDILMRHIKTHTNEKPYKCEDCGHCFNQSTRLKLHKQAHLNHKRYICEICSKVFTQQHGLNIHRLTHTGEKSFLCDICGKSFIRSDDLKKHHRIHSKERPYVCQICSKTFTQSFHLSEHIRAHLKDRLFSCSICNKSFARNGSLRSHLKTHTRDYIEKKHECHICGKKFSVNYSLSKHLLIHTGEKPYRCDICFKGFTQSGHLGAHQKIHTGEKPYICQICGKGFVVSSRLTVHMRSHTGEKPYICTICGKGCTTSTMLKVHQRIHTGETPYHCPNCSKSFSRSDLFNIHKKNCQLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01566411;
90% Identity: -
80% Identity: -