Scau006037.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000688.1:19109-22169[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00033 0.02 15.1 4.1 2 23 17 38 16 38 0.97 2 21 6.9e-06 0.00041 20.4 2.2 1 23 44 66 44 66 0.96 3 21 0.00026 0.015 15.4 1.4 1 23 72 94 72 94 0.99 4 21 0.0015 0.087 13.0 2.2 1 23 100 123 100 123 0.93 5 21 5.4e-06 0.00032 20.7 2.5 3 23 129 149 128 149 0.99 6 21 0.00015 0.0086 16.2 4.9 1 23 159 182 159 182 0.98 7 21 0.029 1.7 9.0 0.1 1 23 189 211 189 211 0.93 8 21 4.9e-07 2.9e-05 24.0 1.8 2 23 218 239 218 239 0.98 9 21 2.1e-05 0.0012 18.9 1.4 1 23 245 267 245 267 0.93 10 21 0.00015 0.009 16.1 0.2 2 23 291 312 290 312 0.96 11 21 1.5e-05 0.0009 19.3 4.5 1 19 318 336 318 340 0.94 12 21 0.18 11 6.5 2.7 2 23 347 368 346 368 0.97 13 21 0.00082 0.049 13.8 0.1 3 23 376 397 374 397 0.94 14 21 0.001 0.061 13.5 0.4 1 23 430 452 430 452 0.96 15 21 0.02 1.2 9.5 3.2 1 14 458 471 458 486 0.91 16 21 3.7e-08 2.2e-06 27.5 0.3 1 23 490 512 490 512 0.96 17 21 5.2e-06 0.00031 20.7 6.3 1 23 522 545 522 545 0.98 18 21 0.00016 0.0097 16.0 0.2 1 23 552 574 552 574 0.98 19 21 2.9e-07 1.7e-05 24.7 1.6 2 23 581 602 581 602 0.97 20 21 2.8e-06 0.00017 21.6 0.7 1 23 608 630 608 630 0.98 21 21 0.00019 0.011 15.8 1.8 1 23 636 659 636 659 0.97
Sequence Information
- Coding Sequence
- atgatacGATCGGTTTTCAGGCATGTTAAGCTGTCATCGAAATTGCAGCAATGTCCGCATTGTCCAAAATTATGCAATGATCGTcgacaattaaaaaaacatttattagTCCATACCGAAAATCGGCCATATTCGTGCGATGTATGCGACAAATCGTTCAAACAAAAACGCACATTAAGACTGCACAAAGAGAATCATAACAATACGAAAATGTACGAATGCGATATTTGCCAGAAAAAGATCAAATTTTATGGTAATTTAATGCTACATCGTCGGCGACATTTGAAAGATTATATGTTCAGTTGTGAGATTTGCGGACAAGGCTTCATACAGCATTGCGAATATAAAAGCCATATCGAAGGCAAGCATAGCAAATCGAATTTGTGTAATATTTGCGGGAAATCCTTCTACAATAAGCATGGCTTAGATTCGCATATGAAACGGCACGATGACGATTATACTGGAAAGCGTAATTTCAAATGCGAATTCTGTACGAAATCATTTATGCAGATGATGCACCTGAAAAAGCACATTAATCGAATGCATAACGATAATCGACGGAAATTCGTGTGTGATTTATGTGGACAAGAATTGGCCAGTCGTGGTGGTTTACGTTACCATAAATACGCCCATGATGGAGTCAAACAAAACGAATGCAAATTGTGTGGAAAGCGATTTAATCGGAAGAATACACTAGTTGAACATATGCGGACACATTCCGGGGAAAAACCGTATAATTGTATAGTTTGTAGTAAATCATTTTCGCAACGGTCATCATTGAAGATACATCTACGGCAACATACCGGGGAAAAACCcaaCGTCTCCAAGAAGAAGATGCGTCCGAAACAACTGAGTGTGGAGAAATCGAAGAAGTGTCCGTATTGTCCGCAAATTTTCGAGCTCAACTATTTATTGAGGCGACATCTAGTCGTGCATACCGAACATCGGCCGTATTCTTGTGAAATTTGCGATAAATCCTTCAAAACGAAATCGAGTTTGAACAGTCACAATAAATGCCAcaatattgtcgataaagtCGAATGTAATATTTGCTgtaagaaattgaagaatacaGCTATGCTGAAATATCATCTTCAGCGACACGCTAAAGACTATAAAGTCATATGCGAATTGTGCGGAACCGGCTTTATTTCGTATGGTTATTACAATAAACATATGGAGAATCGTCATAGGAAATCGTCGTTTTGTACGATTTGTTGTAAATCGTTTTCTGCATTCCGTTTGAAACAACATAACGAAAGGATGCACAATAATGATCGACAAAAATTCATGTGTGATGTTTGCGGAAAGGAGTTGTGCAGCATTTCCGGCTTAACCGCTCACAAGACGATCCACGAGGGGCTGAAAAATTACGAATGTAATGTTTGTggtaaaaaattcaatcggAAAGGCTTCATTTTAAATAGCGaatataaaaaacataaaGAAGAGAAACATAATCGGCTGTATCTTTGTAATGTTTGCGGTAAATCATTTTCTACACCGCAAACATTAGAAAGCCATATGAGAATCCATGCTGAGAACTACAATAAATTCCATGCTTATAAATGCGAATTTTGTAAGCGAACATTCGCCCAACATGCCCATCTGAAGAACCATATGCGTCGATTACACAACGATAATCGCCGGAAAtatatttgtgattattgtggaCGCGAATTAGCGAGTCAGTATGGCTTGACTATGCATAAAAAAATCCATGAGGGCATCAAAAAGAATGAATGTAAAATTTGTGGTAAAAGTTTTGTACGATTATGTAATTTAAAGGAGCATATTCGGATACATTCCGGGGAAAAACCGTATACTTGTCAGACTTGTGGACGATCATTTTCGCAATTGACACCATTAAAAGTCCATTTGAGGTTGCATACCGGGGAAAAACCGTACAATTGTGATAAATGCgaggaaaattttattactcgCAGTGCTCTTTGTATTCATGTTAAAAGTAAACATAGTTAg
- Protein Sequence
- MIRSVFRHVKLSSKLQQCPHCPKLCNDRRQLKKHLLVHTENRPYSCDVCDKSFKQKRTLRLHKENHNNTKMYECDICQKKIKFYGNLMLHRRRHLKDYMFSCEICGQGFIQHCEYKSHIEGKHSKSNLCNICGKSFYNKHGLDSHMKRHDDDYTGKRNFKCEFCTKSFMQMMHLKKHINRMHNDNRRKFVCDLCGQELASRGGLRYHKYAHDGVKQNECKLCGKRFNRKNTLVEHMRTHSGEKPYNCIVCSKSFSQRSSLKIHLRQHTGEKPNVSKKKMRPKQLSVEKSKKCPYCPQIFELNYLLRRHLVVHTEHRPYSCEICDKSFKTKSSLNSHNKCHNIVDKVECNICCKKLKNTAMLKYHLQRHAKDYKVICELCGTGFISYGYYNKHMENRHRKSSFCTICCKSFSAFRLKQHNERMHNNDRQKFMCDVCGKELCSISGLTAHKTIHEGLKNYECNVCGKKFNRKGFILNSEYKKHKEEKHNRLYLCNVCGKSFSTPQTLESHMRIHAENYNKFHAYKCEFCKRTFAQHAHLKNHMRRLHNDNRRKYICDYCGRELASQYGLTMHKKIHEGIKKNECKICGKSFVRLCNLKEHIRIHSGEKPYTCQTCGRSFSQLTPLKVHLRLHTGEKPYNCDKCEENFITRSALCIHVKSKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -