Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010001592.1:3187-6911[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2e-05 0.0012 18.9 3.6 1 23 14 37 14 37 0.98

2 21 2e-06 0.00012 22.0 0.4 1 23 54 76 54 76 0.99

3 21 1.3e-06 7.9e-05 22.6 0.2 1 23 82 104 82 104 0.98

4 21 0.00076 0.045 13.9 0.4 2 23 114 136 114 136 0.92

5 21 4.3e-07 2.6e-05 24.1 0.8 1 23 142 164 142 164 0.98

6 21 6.1e-06 0.00036 20.5 0.6 1 23 170 192 170 192 0.98

7 21 0.0011 0.066 13.4 0.2 2 23 199 221 198 221 0.93

8 21 1e-05 0.00061 19.8 0.5 3 23 227 247 226 247 0.99

9 21 0.0023 0.14 12.4 3.8 1 23 257 280 257 280 0.97

10 21 0.00048 0.028 14.6 0.3 1 23 287 309 287 309 0.97

11 21 1.6e-05 0.00094 19.2 1.0 2 23 316 337 316 337 0.97

12 21 0.00091 0.054 13.7 1.5 1 23 351 374 351 374 0.92

13 21 1.6e-07 9.6e-06 25.5 3.0 1 23 380 402 380 402 0.98

14 21 0.0063 0.38 11.0 3.4 1 23 408 430 408 430 0.97

15 21 0.0007 0.041 14.0 0.1 1 23 436 459 436 459 0.92

16 21 0.00037 0.022 14.9 1.3 1 23 463 485 463 485 0.95

17 21 0.0027 0.16 12.2 7.4 1 23 495 518 495 518 0.98

18 21 2.5e-05 0.0015 18.6 1.2 1 23 525 547 525 547 0.98

19 21 9.6e-05 0.0057 16.7 3.6 1 23 553 575 553 575 0.98

20 21 7.7e-08 4.6e-06 26.5 0.8 1 23 581 603 581 603 0.98

21 21 0.027 1.6 9.0 2.9 1 23 609 632 609 632 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2e-05	0.0012	18.9	3.6	1	23	14	37	14	37	0.98
2	21	2e-06	0.00012	22.0	0.4	1	23	54	76	54	76	0.99
3	21	1.3e-06	7.9e-05	22.6	0.2	1	23	82	104	82	104	0.98
4	21	0.00076	0.045	13.9	0.4	2	23	114	136	114	136	0.92
5	21	4.3e-07	2.6e-05	24.1	0.8	1	23	142	164	142	164	0.98
6	21	6.1e-06	0.00036	20.5	0.6	1	23	170	192	170	192	0.98
7	21	0.0011	0.066	13.4	0.2	2	23	199	221	198	221	0.93
8	21	1e-05	0.00061	19.8	0.5	3	23	227	247	226	247	0.99
9	21	0.0023	0.14	12.4	3.8	1	23	257	280	257	280	0.97
10	21	0.00048	0.028	14.6	0.3	1	23	287	309	287	309	0.97
11	21	1.6e-05	0.00094	19.2	1.0	2	23	316	337	316	337	0.97
12	21	0.00091	0.054	13.7	1.5	1	23	351	374	351	374	0.92
13	21	1.6e-07	9.6e-06	25.5	3.0	1	23	380	402	380	402	0.98
14	21	0.0063	0.38	11.0	3.4	1	23	408	430	408	430	0.97
15	21	0.0007	0.041	14.0	0.1	1	23	436	459	436	459	0.92
16	21	0.00037	0.022	14.9	1.3	1	23	463	485	463	485	0.95
17	21	0.0027	0.16	12.2	7.4	1	23	495	518	495	518	0.98
18	21	2.5e-05	0.0015	18.6	1.2	1	23	525	547	525	547	0.98
19	21	9.6e-05	0.0057	16.7	3.6	1	23	553	575	553	575	0.98
20	21	7.7e-08	4.6e-06	26.5	0.8	1	23	581	603	581	603	0.98
21	21	0.027	1.6	9.0	2.9	1	23	609	632	609	632	0.97

Sequence Information

Coding Sequence: ATGAAGCGACATGAAGACAACTATATCGATAAGCGTAATTTCAAATGCGAATTGTGTCCGAAATCTTTTATGCAAGAGTTTCATTTGCGCAAACACGTGAAACGGATGCACAACGATAATCGCTTGAAATATATTTGCGATTTTTGCGGGGTGAAATCGTACGAATGTAGTGCTTGCGGTAGGAGATTCGTCAAGAAGGCTTCTTTAACAATACATTTGAGGACGCATACGGGGGAAAAACCGTACAACTGTGAGATCTGTGGCAAAACTTTCGCCCAACGTAGTCCTTTGGTTCTGCATCTACGTCAACATACCGGCGAGAAACCGTATCCACCGAACGAGTGTCCCAAATGTTTGAAAACCTTCCCCAGAGAGCTCCTGCTGAAGAAACATCTATTATTCGTCCATACCGATAACCGGCCATATTCCTGCGATATTTGCAAGAAATCGTACAAGCGTCAAGACGCCTTGAAGGCCCATCAAACCATCCATGATAAATTGGCAAAATTCCAGTGTGATATTTGCGAGAAAAAAGTATCGAGTAATTCAGCTTTGATCCGACATAAACAACGTCACACGCAAAATTACCGGATTCATTGTGAAATTTGCGGTAATGGTTTCGTTTCGAATGCCGAATATCAGGTCCATATGAGCGGCAAACATGATAAATCGAATCTTTGTGATATTTGCGGCAAATCATTGTCGAGTAAACGGGCTTTAGAATATCACATGAAACGACATGAGGAAaattacaaagaaaaatgtaattttcaatGTGAATTGTGTATGAAACAATTCCGGCAATTGTtccatttgaaaattcatGTGAAACGGATGCATAGCGATAATCGACGGAAATTCATGTGCGATTTTTGCGGAAAAGAAGTGACGTCGTTGAAAAGTCTAAATGAGCATAGAGATGTGCATTTGGGTGTTAAAGCCAACGAATGCGGTACTTGTGGTCGACAATTCACTAGGAAAAGGGCTCTGAAATATCATTTATTGACACATACGGGGGAAAAACCGTATCAAATAACTTCTGAAGGCTCCCATCAATGTTTGCAGTGTTCGAGAATCTTCAAAAAATGGCCTCTATTGAAGCGCCATGTATTGTTCGTCCATACCGAAAACCGTCCTTATTCCTGCGATATTTGTAATAAGTCCTTCAAACATAAGGACGCATTGAAGGTCCATCAAAATCGCCATAATAAATCGGCCCGATTCAGATGTGATGTGTGCGAAATGGTATGTGACAGTAATCATTCGTTGAAGATCCACAAAGATCGtcatttgagaaaattcaattttttttgcgaaatttgCGGATTAGGATTCGTCGCGAATAGCGACTACCAAACCCATATGGACGGCAAACACAACAATGTGTACCTTTGCGACTTTTGCGGGAAATCTTTGAACACTAAATGGAGTttaaaattacataaaaaGCTACACGAAGAAAATTACACGGAAAATCGCAATTTCAAATGCGACTTCTGCTCGAAATCATTCATGCAAGTGTGTCATTTGAGAAAACATGTGAAACGGATGCACAACGATAATCGGCCGAAATATATTTGCGATTTATGTGGGAAAAAATTGAGCAGTCCACACAGTCTTGAGGATCACAGAAAACGCCATTCGGGAGACAAAGCGCATGAATGTGAAATTTGTGGAAAGAAATTCACGTGTAAGAAGACTTTAATCGTACATTTACGGATACATACCGGGGAAAAACCCTACAATTGCACCATTTGTGGAAAATCATTTACACAGAGCGGCACATTAAAATTGCATCTAAGGGAACATACAGACGAGAAACCGTACAATTGCACCATCTGTAAAGAGGAATTCGATCATGAGCAAGCCTTCGATAGCCACTACAAGAAAAAACACTGA
Protein Sequence: MKRHEDNYIDKRNFKCELCPKSFMQEFHLRKHVKRMHNDNRLKYICDFCGVKSYECSACGRRFVKKASLTIHLRTHTGEKPYNCEICGKTFAQRSPLVLHLRQHTGEKPYPPNECPKCLKTFPRELLLKKHLLFVHTDNRPYSCDICKKSYKRQDALKAHQTIHDKLAKFQCDICEKKVSSNSALIRHKQRHTQNYRIHCEICGNGFVSNAEYQVHMSGKHDKSNLCDICGKSLSSKRALEYHMKRHEENYKEKCNFQCELCMKQFRQLFHLKIHVKRMHSDNRRKFMCDFCGKEVTSLKSLNEHRDVHLGVKANECGTCGRQFTRKRALKYHLLTHTGEKPYQITSEGSHQCLQCSRIFKKWPLLKRHVLFVHTENRPYSCDICNKSFKHKDALKVHQNRHNKSARFRCDVCEMVCDSNHSLKIHKDRHLRKFNFFCEICGLGFVANSDYQTHMDGKHNNVYLCDFCGKSLNTKWSLKLHKKLHEENYTENRNFKCDFCSKSFMQVCHLRKHVKRMHNDNRPKYICDLCGKKLSSPHSLEDHRKRHSGDKAHECEICGKKFTCKKTLIVHLRIHTGEKPYNCTICGKSFTQSGTLKLHLREHTDEKPYNCTICKEEFDHEQAFDSHYKKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -