Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010002524.1:1-6659[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 3.9e-06 0.00023 21.1 1.9 1 23 37 59 37 59 0.99

2 27 2.2e-05 0.0013 18.8 0.4 2 23 68 89 67 89 0.96

3 27 0.00023 0.014 15.6 2.1 1 23 95 117 95 117 0.97

4 27 0.00087 0.052 13.7 0.2 3 23 125 146 124 146 0.91

5 27 0.00014 0.0082 16.3 0.0 3 23 153 173 151 173 0.97

6 27 0.11 6.5 7.1 3.5 3 23 178 196 177 196 0.79

7 27 0.00027 0.016 15.3 0.8 1 23 203 225 203 225 0.97

8 27 6.6e-06 0.00039 20.4 1.5 1 23 231 253 231 253 0.97

9 27 6e-08 3.6e-06 26.8 0.6 1 23 259 281 259 281 0.99

10 27 0.053 3.1 8.1 3.6 1 15 287 301 287 310 0.79

11 27 0.0052 0.31 11.3 3.9 1 21 319 339 319 341 0.94

12 27 0.0025 0.15 12.3 0.2 2 23 348 370 347 370 0.97

13 27 2.4e-06 0.00014 21.8 0.3 1 23 375 397 375 397 0.98

14 27 0.67 40 4.7 1.0 3 23 406 424 405 424 0.81

15 27 0.00012 0.0073 16.4 1.2 2 23 432 454 431 454 0.95

16 27 3.9e-06 0.00023 21.1 2.2 3 23 462 482 460 482 0.97

17 27 7.9e-06 0.00047 20.2 0.6 2 23 489 510 488 510 0.96

18 27 0.0028 0.17 12.1 0.4 2 18 518 534 517 534 0.93

19 27 0.0011 0.063 13.5 0.3 2 23 598 619 597 619 0.95

20 27 0.21 12 6.3 4.1 1 23 625 647 625 647 0.97

21 27 0.0043 0.26 11.6 1.9 1 23 653 675 653 675 0.91

22 27 7.4e-05 0.0044 17.1 3.6 1 23 681 704 681 704 0.98

23 27 0.0011 0.064 13.4 3.4 1 23 716 739 716 739 0.93

24 27 0.0052 0.31 11.3 3.0 3 23 750 770 749 770 0.98

25 27 2.9e-08 1.7e-06 27.8 0.4 1 23 776 798 776 798 0.98

26 27 2e-06 0.00012 22.0 0.7 1 23 804 826 804 826 0.98

27 27 0.016 0.94 9.8 0.1 1 22 832 853 832 853 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	3.9e-06	0.00023	21.1	1.9	1	23	37	59	37	59	0.99
2	27	2.2e-05	0.0013	18.8	0.4	2	23	68	89	67	89	0.96
3	27	0.00023	0.014	15.6	2.1	1	23	95	117	95	117	0.97
4	27	0.00087	0.052	13.7	0.2	3	23	125	146	124	146	0.91
5	27	0.00014	0.0082	16.3	0.0	3	23	153	173	151	173	0.97
6	27	0.11	6.5	7.1	3.5	3	23	178	196	177	196	0.79
7	27	0.00027	0.016	15.3	0.8	1	23	203	225	203	225	0.97
8	27	6.6e-06	0.00039	20.4	1.5	1	23	231	253	231	253	0.97
9	27	6e-08	3.6e-06	26.8	0.6	1	23	259	281	259	281	0.99
10	27	0.053	3.1	8.1	3.6	1	15	287	301	287	310	0.79
11	27	0.0052	0.31	11.3	3.9	1	21	319	339	319	341	0.94
12	27	0.0025	0.15	12.3	0.2	2	23	348	370	347	370	0.97
13	27	2.4e-06	0.00014	21.8	0.3	1	23	375	397	375	397	0.98
14	27	0.67	40	4.7	1.0	3	23	406	424	405	424	0.81
15	27	0.00012	0.0073	16.4	1.2	2	23	432	454	431	454	0.95
16	27	3.9e-06	0.00023	21.1	2.2	3	23	462	482	460	482	0.97
17	27	7.9e-06	0.00047	20.2	0.6	2	23	489	510	488	510	0.96
18	27	0.0028	0.17	12.1	0.4	2	18	518	534	517	534	0.93
19	27	0.0011	0.063	13.5	0.3	2	23	598	619	597	619	0.95
20	27	0.21	12	6.3	4.1	1	23	625	647	625	647	0.97
21	27	0.0043	0.26	11.6	1.9	1	23	653	675	653	675	0.91
22	27	7.4e-05	0.0044	17.1	3.6	1	23	681	704	681	704	0.98
23	27	0.0011	0.064	13.4	3.4	1	23	716	739	716	739	0.93
24	27	0.0052	0.31	11.3	3.0	3	23	750	770	749	770	0.98
25	27	2.9e-08	1.7e-06	27.8	0.4	1	23	776	798	776	798	0.98
26	27	2e-06	0.00012	22.0	0.7	1	23	804	826	804	826	0.98
27	27	0.016	0.94	9.8	0.1	1	22	832	853	832	853	0.95

Sequence Information

Coding Sequence: TATGCGACGAGAGTCGGGGAAAATTCGGTGAAATGTTCCGAATGCTCGAAAATCTTGCACAAAACAAGCTGGCCACGACACCGCTACACTCACTCCGTAATTCGACCGTATACTTGtgaaatttgccaaaaaacattcaaatatcaacaaaCTCTAGCATCACATAAACGCGTCCATGAAAATGCCCGCCCTAGACCGTGCATGTGTGAGAAATGCGGCAAAGCGTTCCCCACCATTGGGGGCCTCAAGCTCCATCTACGGATCCATGATCCGGCACAATGTTACGAATGCGACATCTGCCATAAAGTATTGACCAGCTCCCATGGTATGCGGAAACATCTGCTATGGCACACGGAGAAGGGCGCGGGAATCTGCGATATTTGCAATAAGGGCTTCTCGTCGGTCATCTCTCTACGCAAGCACAAAGAAGAAGAACATAAAGTCGCAGAGTTCGGCTGCCCAATTTGCCAAAAATCGTTCCCTGGCAATGCAGCGCTACAATACCATATGGGGAGTCATGAAACTGGTTTCTGTAAAATCTGCAATAAAACACGGTCCAATCTCAAAcgacatataaaaaaaaagcacaatGAAAATCGCCTAAGATTCATCTGTGATGTATGCGGCAAGGAAGTATCGTCGAATTGCAGTTTGCGAGACCATAAAAACGTGCATTCAGGTGTGAAATCGTTCGATTGTACGACTTGCGGGAAGAAATTCGGTAAACTGATGACGTTGAAAGTGCATATGCGGACGCACACCGGCGAAAAACCGTACACTTGTAATATTTGCGGTAAATCGTTCACGCAACGCAGTCCGCTAGTCATCCATTTACGTAAACATGCCGGCCAAAAGCCGTACAAGTGCGATATTTGCGGGGAGAATTTCACCGATAAATACCGGCGCGATTGTCATTTGAAAACGAAacatcaaaaattATCGTCGCTGGCCAATTTCGAGTGCGATATTTGCCGCCAAAAATTCCGATACTCTCACAGTCTAGCCAGTCACATTCTCTGCCACAACAGCCAACAAAAAGACACCTGTAAAATCTGCGGAGCCGGTTTTCCCGCCATCGCTAAACTCCGCCATCATTTGAAAACCGTCCATCAGATCTATCCGTACGTTTGCGATATTTGCGGCAAATCGTACACGAAACGATTATCGCTGAAATGGCATTTAGCCACCCATGAAGACGGCTCCGATGAGCGTCTATGTAAAATATGCAATCGAAAATTTGCCGATATCAAAAAACATATGGAACGGATGCACGACGATAATCCGCGGAAGTTGATGTGCGATATTTGCGGGAAAAAAGTGACCTCGCATCGAAGTCTCCGCGATCACATCAACAGCCAACATTTGAACGTCAAGCCGTATGGGTGTGATCGATGCGACAAGAAATTCGCCCGGAAGCACAATCTGACGATACATTTGAGGATTCACAGCGGGGAAAAACCGTGCGTTTGTCAATTTTGCGGCAAGAGATTCGCCCAACCGTCGGTTTTGATAGCGCATCTGCAGACCCACAAGAGCGATAAGAAATCGATCACGTGCAATATTTGCGAGAAGAAATTCCCCTCCAAGTCCTTATTAAAGAAGTTGATCTGTGGTCCGTCGATATCTATAACGCCGATTAAGCgggaaaattcgagaaaaatcaaaaatattgtgGCAAAAACCGCCAAAAAGCCGACATCTAGTAGCGAATCCGTGAATGACGATGACGATGACGATTACGTGGTGGACGACGAGGCGAATGGCGGCAAAAAACGGCGAAACGAAGCCGTCCGTTGCGAGATCTGCGATAAAATCTACCGAAACAACGTCGCTTTCGCTCACCATTCAATCGTCCATAACGACGACAAGAAATATTCGTGTCATTTATGCGACTATCGCAACACATCGAAATACCACATCGAGATGCACATCAAGGCTCACGAAGGCACCACGAAATACAAGTGCGAAATTTGCCAAAAAGCCTTCACTGTCAGCACGCACGCCATCGAACACAAATATTTCCATACCGGCGAAAAACCGTTTCAATGCGAAATATGCGGCAAACATTTCATGTTCTCATGGTTCCTAACATCACATCGACGCACCCAACATTGGGAAATAATGACCGGCACGCCACTGGTCAAATACGACTGCAAACTATGCAACAAACATTACACCTCGTCAACCGGTCTACGGCGGCACAACATCAGCAAACATAACGCTACCGGAGTTGATGTGTCCGTTTTGTGCGACATTTGCGGCAAATGTTTGTCGAGTAAAGAGAAATTGAAGTTTCATCGACGCATCCATACCGGCTATAAACCGTACAGTTGTCCAATTTGTCCGAAAAGTTTCTCGCGTAAGGAACAATTAAAGGAGCACGAACGCGTTCATACCGGAGAAAAACcgtttatttgtaatttttgcgGTAAAGGATTCACGCAACGCTCGCCGTTACGGATACACGAACGTACGCACACCGGCGAACGGCCCTATATTTGCCGGGTGTGCGGCAAGGGCTACATCTCGAAGGGCGTGATGGACACGCACATGAAGACCTGCTCTTTCATCCctatttattaa
Protein Sequence: YATRVGENSVKCSECSKILHKTSWPRHRYTHSVIRPYTCEICQKTFKYQQTLASHKRVHENARPRPCMCEKCGKAFPTIGGLKLHLRIHDPAQCYECDICHKVLTSSHGMRKHLLWHTEKGAGICDICNKGFSSVISLRKHKEEEHKVAEFGCPICQKSFPGNAALQYHMGSHETGFCKICNKTRSNLKRHIKKKHNENRLRFICDVCGKEVSSNCSLRDHKNVHSGVKSFDCTTCGKKFGKLMTLKVHMRTHTGEKPYTCNICGKSFTQRSPLVIHLRKHAGQKPYKCDICGENFTDKYRRDCHLKTKHQKLSSLANFECDICRQKFRYSHSLASHILCHNSQQKDTCKICGAGFPAIAKLRHHLKTVHQIYPYVCDICGKSYTKRLSLKWHLATHEDGSDERLCKICNRKFADIKKHMERMHDDNPRKLMCDICGKKVTSHRSLRDHINSQHLNVKPYGCDRCDKKFARKHNLTIHLRIHSGEKPCVCQFCGKRFAQPSVLIAHLQTHKSDKKSITCNICEKKFPSKSLLKKLICGPSISITPIKRENSRKIKNIVAKTAKKPTSSSESVNDDDDDDYVVDDEANGGKKRRNEAVRCEICDKIYRNNVAFAHHSIVHNDDKKYSCHLCDYRNTSKYHIEMHIKAHEGTTKYKCEICQKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCKLCNKHYTSSTGLRRHNISKHNATGVDVSVLCDICGKCLSSKEKLKFHRRIHTGYKPYSCPICPKSFSRKEQLKEHERVHTGEKPFICNFCGKGFTQRSPLRIHERTHTGERPYICRVCGKGYISKGVMDTHMKTCSFIPIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -