Scau009224.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010001592.1:7719-11904[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.00014 0.0086 16.2 1.1 1 23 9 31 9 31 0.95 2 33 0.00088 0.052 13.7 4.7 1 23 41 64 41 64 0.98 3 33 0.0016 0.096 12.9 0.4 1 23 71 93 71 93 0.98 4 33 2.4e-06 0.00014 21.8 2.9 1 23 99 121 99 121 0.98 5 33 4.4e-07 2.6e-05 24.1 0.4 1 23 127 149 127 149 0.98 6 33 0.0068 0.4 10.9 3.1 1 23 155 178 155 178 0.97 7 33 0.037 2.2 8.6 3.7 1 23 190 213 190 213 0.93 8 33 2.3e-06 0.00014 21.9 3.9 1 23 219 241 219 241 0.98 9 33 0.00015 0.0091 16.1 3.5 1 23 247 269 247 269 0.98 10 33 0.0022 0.13 12.5 1.4 1 23 275 298 275 298 0.95 11 33 2.9e-05 0.0018 18.4 0.6 1 23 302 324 302 324 0.99 12 33 0.0015 0.089 13.0 4.9 2 23 335 357 334 357 0.97 13 33 0.0019 0.11 12.7 0.2 1 23 364 386 364 386 0.98 14 33 1.5e-06 8.8e-05 22.5 3.2 1 23 392 414 392 414 0.98 15 33 2e-07 1.2e-05 25.2 1.7 1 23 420 442 420 442 0.98 16 33 0.11 6.5 7.1 5.4 1 23 448 471 448 471 0.96 17 33 0.037 2.2 8.6 3.7 1 23 483 506 483 506 0.93 18 33 4.3e-07 2.6e-05 24.1 2.3 1 23 512 534 512 534 0.98 19 33 0.00048 0.028 14.6 3.5 1 23 540 562 540 562 0.97 20 33 0.013 0.76 10.1 1.2 1 23 568 591 568 591 0.93 21 33 0.00015 0.0091 16.1 1.1 1 23 595 617 595 617 0.99 22 33 0.00015 0.0087 16.2 5.4 2 23 628 650 627 650 0.97 23 33 0.0015 0.09 13.0 0.6 1 23 657 679 657 679 0.98 24 33 6.7e-06 0.0004 20.4 2.5 1 23 685 707 685 707 0.98 25 33 2e-07 1.2e-05 25.2 1.7 1 23 713 735 713 735 0.98 26 33 0.0047 0.28 11.4 3.2 1 23 741 764 741 764 0.97 27 33 0.11 6.4 7.2 4.7 1 23 776 799 776 799 0.86 28 33 8.8e-07 5.2e-05 23.2 0.5 1 23 805 827 805 827 0.97 29 33 8.9e-06 0.00053 20.0 4.4 2 23 866 888 865 888 0.96 30 33 0.009 0.53 10.6 0.1 1 23 893 915 893 915 0.97 31 33 2.9e-05 0.0017 18.4 3.9 1 23 921 943 921 943 0.98 32 33 0.00077 0.046 13.9 2.9 1 23 949 971 949 971 0.97 33 33 0.046 2.7 8.3 2.6 1 23 973 996 973 996 0.96
Sequence Information
- Coding Sequence
- ATGGACGGTAAACACAACAATATGTTTCTTTGCGACATTTGCGGAAGGTCCTTGAACAGTAAAGAGAGCTTGAAACTGCATAAGAAACGACACGAAGAAAATTACACGGAAAATCGCAATTTCAAATGCGAATTCTGTGCGAAAACGTTCATGCAAGAGTTCCATTTGAGGAAACACGTGAAACGGATGCACAACGATAATCGGCCGAAatatatttgtgatttatgCGGTAAAGAAATCAGCAGTCTTCAAAGTTTTAAGGATCATAGGAAAATCCATTCGGGGGTCAAATCGCATGAGTGCGGCAATTGTGGGAAGAAATTCACGAAAAAGAAGACTTTAATCGTACATTTACGGACACATACCGGGGAAAAACCCTACAATTGCACCATTTGTGGGAAATCATACACACAGAGCGGCACATTAAACATACATCTGAGGGAACATACCGGGGAAAAACCGTACAATTGCGATATTTGTGAGGAGAAATTCATCAGTAAACAACATCGAGACTACCATATGAGAAGAACGCATCAAAAACTGTATCAACTAACCTCCGATGGTTCCCATCAATGCCTGCAATGCCTGAAAATCTTCCAGAAACGGTTCCAATTGCGGCGCCATCTATTGTTCGTGCACACCGAAAATCGCCCATTTTCGTGCGATATTTGCGGGAAATCTTTTAAACAACAAGGCACCATGCGCAAACATCACAATCGTCATATTAAAGTCGGCAAATACGAATGTGATATTTGCCAGAAACGTTTCCACAATAATTGGTATTTACGTGAACATAAAAATCGacatttgaagaaaatcaattattattgcgaAATATGCGGACAAGGATTCGTCACGAAGAACAGCCACCAAAGTCACATGAACGCCAAACACAACAATCGTTATCGTTGCGAGATTTGCGGCACATCCTTGTACAGTAAAGGCGGTTTGAAATTACATCAGAAACGACACGAGGAAAATTACATGGAAAATCGCAATATTAAATGTGAATTTTGTCCGAAAACTTTCATGCAAGATCTGCATTTAAAACACCACATGAAACGCATGCACAACGCTAATCGCCCGAAATATATTTGTGAATTATGCGGCAAAGAAATCAGCAGTTTGGGCAGTTTTAAGGACCATAAAAAAATCCACGCCGGACTAAAATCACATGAGTGCGATATATGCGAGAAGAAATTTACCAATAAGAATAGTCTAATGACACATTTGAGGACACATACCGGGGAAAAACCGTACTGTTGTAATATTTGTGGGAAATCATTTACACAAAGCGGCACATTAAATATACATTTGAGAGAACATACCGGGGAAAAACCGTACAATTGCGATATTTGTGATGAGAAATTTATAAGTAAACAACATTGTGATTATCACATGAAACGAACACatcaaaaattGTATCAGCTGACTTCCGATGGTTCCCATCAATGTCTCCAATGCCTGAAAATCTTCCAGAAACGGTTCCAATTGAGGCGCCATCTATTGTTCGTGCACACCGACAATCGTCCGTTTACCTGCGATATTTGCAATAAATCGTTTAAACAAAAGGGCACGTTACGGGTCCATCGGAATCGgcacaataaaattttacgattCGAATGTGATATTTGCCAGAAACGATTCGGTAcgaattgttatttgaaagaGCATCGTGATCGACATTTGAagaaattcagttttttttgcgaaatttgCGGACAAGGCTTCGTCACGAAAAATGATCACCAAAATCACTTGAATGccaaacacaataaaacgtaTCGTTGTGATATTTGCGATACGTCACTGTACAGTAAAGAAGGCTTGAAACTGCATAGGAAACGGCACGAGGAAAATTACATGGAAAATCGCAATATTAAATGCGAATTTTGTCCGAAAACTTTCATGCAACAATTACATTTGAAACATCACATGAAACGGATGCACAATGAAAATCGTCCGAAatatatttgtgatttatgtGGAAAAGAGATAAGTAATTTGAAGAGTTTCAAAGATCACAAGAAAATCCATTCCGGCTTGAAATCGCACGAGTGCGGAACGTGCGGTAGAAAATTCACAGTGAAAAACACTTTAATTAAACATTTGAGAACTCATACTGGAGAAAAACCGTACTGTTGTAATATTTGTGGGAAATCATTCACACAGAGCGGCACATTAAATATACATCTGAGGGAACATACCGGGGAAAAACCGTATAATTGCGATATTTGCGATGAGAAATTCATCAGTAAACAACATCGTGATTATCACATGAAACGGACACATCAGAAATTGTACGAGTTAACTCCTGATGGATCCTATGAATGTCTCCAATGCTCCAGAATTTTCCAGAAACACAAACTATTGAAGCACCATCTATTATTCGTGCACACCGAAAATCGTCCATTTTCCTGCGATATTTGCGAAAAATCCTTCAAACAAAAAGGCGCTTTACGCATACATCAGAATCTGCACAATAAAGTCGACCGATGGGAAAGTGAAATTCGCGAAAAGCCGCTCTGCAGTGAAAATAGCCCTAAACTGAGAGAAAAACTACATGAAGAAAATGCTACGGAAAATCGCAACATTAAATGCGAATTTTGTCCTAAAACgttcaaacaacaacaacacctgAAACAACACATGACACGCACCCATGATCGGCCCAAATACATCTGCGATTTATGCGGGAAAGAACTTCGTGGTTTGAAAGGTTTAGAAAATCACAAGAATCTCCACTTTAATATCAAACCACATGAATGTGAAACCTGCGGTGAGAAATTCATACAGAAATGTGATTTAATGAAACATTTGAGATCACATACGGGGGAAAAACCGTACTGTTGTAACAGTTGTGGTGAATCATTCGAACGTAAAAAGTCATTTATTATACATTCACGTGAACACATGTATAGTTGCGATGTTTGTGATGAGAAATTTATTAGTGAACAACATCGTGATAATCACAAGAAACGCACACATTAG
- Protein Sequence
- MDGKHNNMFLCDICGRSLNSKESLKLHKKRHEENYTENRNFKCEFCAKTFMQEFHLRKHVKRMHNDNRPKYICDLCGKEISSLQSFKDHRKIHSGVKSHECGNCGKKFTKKKTLIVHLRTHTGEKPYNCTICGKSYTQSGTLNIHLREHTGEKPYNCDICEEKFISKQHRDYHMRRTHQKLYQLTSDGSHQCLQCLKIFQKRFQLRRHLLFVHTENRPFSCDICGKSFKQQGTMRKHHNRHIKVGKYECDICQKRFHNNWYLREHKNRHLKKINYYCEICGQGFVTKNSHQSHMNAKHNNRYRCEICGTSLYSKGGLKLHQKRHEENYMENRNIKCEFCPKTFMQDLHLKHHMKRMHNANRPKYICELCGKEISSLGSFKDHKKIHAGLKSHECDICEKKFTNKNSLMTHLRTHTGEKPYCCNICGKSFTQSGTLNIHLREHTGEKPYNCDICDEKFISKQHCDYHMKRTHQKLYQLTSDGSHQCLQCLKIFQKRFQLRRHLLFVHTDNRPFTCDICNKSFKQKGTLRVHRNRHNKILRFECDICQKRFGTNCYLKEHRDRHLKKFSFFCEICGQGFVTKNDHQNHLNAKHNKTYRCDICDTSLYSKEGLKLHRKRHEENYMENRNIKCEFCPKTFMQQLHLKHHMKRMHNENRPKYICDLCGKEISNLKSFKDHKKIHSGLKSHECGTCGRKFTVKNTLIKHLRTHTGEKPYCCNICGKSFTQSGTLNIHLREHTGEKPYNCDICDEKFISKQHRDYHMKRTHQKLYELTPDGSYECLQCSRIFQKHKLLKHHLLFVHTENRPFSCDICEKSFKQKGALRIHQNLHNKVDRWESEIREKPLCSENSPKLREKLHEENATENRNIKCEFCPKTFKQQQHLKQHMTRTHDRPKYICDLCGKELRGLKGLENHKNLHFNIKPHECETCGEKFIQKCDLMKHLRSHTGEKPYCCNSCGESFERKKSFIIHSREHMYSCDVCDEKFISEQHRDNHKKRTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -