Scau001177.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodera caucasica
Gene Symbol
-
Assembly
GCA_037414795.1
Location
JAZBGZ010000049.1:32918-37651[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 6.6e-05 0.0039 17.3 0.9 1 23 110 133 110 133 0.94
2 30 8.1e-07 4.8e-05 23.3 1.7 2 23 137 158 137 158 0.96
3 30 3.6e-06 0.00022 21.2 2.5 1 23 164 186 164 186 0.98
4 30 9.4e-06 0.00056 19.9 3.9 1 23 192 214 192 214 0.98
5 30 0.57 34 4.9 6.7 1 23 220 245 220 245 0.85
6 30 9.4e-08 5.6e-06 26.2 2.0 1 23 251 273 251 273 0.98
7 30 1.2e-06 6.9e-05 22.8 2.0 1 23 279 301 279 301 0.98
8 30 8.3e-05 0.0049 17.0 0.5 1 23 326 348 326 348 0.95
9 30 2e-07 1.2e-05 25.2 0.4 1 23 355 377 355 377 0.98
10 30 1.7e-06 0.0001 22.2 0.7 1 23 383 405 383 405 0.99
11 30 7.9e-05 0.0047 17.0 0.5 1 23 411 433 411 433 0.97
12 30 2.1e-05 0.0012 18.8 3.9 1 23 439 461 439 461 0.98
13 30 0.44 26 5.2 0.3 1 11 467 477 467 481 0.86
14 30 0.023 1.4 9.2 7.3 1 23 591 614 591 614 0.95
15 30 5e-06 0.0003 20.8 0.3 1 23 617 639 617 639 0.97
16 30 8.4e-07 5e-05 23.2 2.8 2 23 646 667 645 667 0.98
17 30 2.2e-06 0.00013 21.9 2.0 1 23 673 695 673 695 0.99
18 30 5.7e-05 0.0034 17.5 2.0 1 23 701 723 701 723 0.97
19 30 0.00013 0.0077 16.3 0.4 1 23 729 751 729 751 0.91
20 30 1.2e-06 7.3e-05 22.7 3.9 1 23 757 779 757 779 0.99
21 30 0.00017 0.01 16.0 0.2 1 23 813 836 813 836 0.97
22 30 0.00033 0.019 15.1 3.0 1 23 842 864 842 864 0.97
23 30 7.5e-06 0.00044 20.2 2.1 1 23 870 892 870 892 0.98
24 30 8e-08 4.7e-06 26.4 2.5 1 23 898 920 898 920 0.98
25 30 0.0022 0.13 12.4 7.7 1 23 933 955 933 955 0.98
26 30 2.6e-06 0.00015 21.7 0.8 1 23 961 983 961 983 0.98
27 30 0.0025 0.15 12.3 0.6 1 23 989 1011 989 1011 0.98
28 30 1.4e-06 8.5e-05 22.5 1.5 1 23 1017 1039 1017 1039 0.98
29 30 2.3e-06 0.00013 21.9 0.2 1 23 1045 1067 1045 1067 0.98
30 30 0.00017 0.01 16.0 6.3 1 23 1073 1095 1073 1095 0.98

Sequence Information

Coding Sequence
ATGAAACTAGTCCATAATGTTATGTTATTAGATGTTGATAGAAATGAAGAAGAATTCGATAATGTTGATACAGAAAATCAAGTAGAAGATTCCAGAAGTGAACGTGAACAGCAAAGCTCTGGAATTGataaaaaaaaatcaaatgaaaataatactaCAGCTGATAATGTTGGTAATAATAGTAGTGATAGTCGAGATTCAAATGAGAACgaagaaataaattttgtagagCCTTGTAAAGTAGAGATTGAAGAAAAACTTTATCAATCTGAGAAAGATCAGTCATCTAATTCAGATCTTGATAAAGAtggaacaacaaaaaaatcacatgATTGTAGTATTTGTGAACAAAATTTTCGCTATAAATCAGAATTGAATGCTCATTTGAAAGCTGAACATGGCTCAAATACGTgcaatatttgtaataaaacattCTCAACAAAATCATATTTGAAAACTCACTTAGATATCCATAAAGATGAGAAACTTCATCAGTGTAATATTTGTGGTAAAACTTTTAcgttaattcaaaatttgaagacACACCAGAAAATCCATACCGGTGAAAAATCACATCAATGtaatatttgttcaaaaacttTCACATCAAGTACCACTTTGAAAGTACATTTTCGAATACATACAGGTGAAAAACCGTATCATTGTAATACTTGTGGGAAAGATTTCTCATCATTCACATCAAGTACCACATTGAAGGTACATTTCCGAATACATACCGGTGAAAAACCGTATCATTGTAGTATTTGCGGTAAAGATTTCTCTGTTAGAGAAAACTTAAAGAAACATATGAGAGTACACACAGGTGAAAAACCGTATCAGTGTGATATTTGCGGTAAAAGTTACACAAATAGTACATCATTAAAGTCACATAAGAGTAAACATacagaaattgattataatacaGATAAGAATCTATCATTGGACGATGTAACATCACAAAATAACGACAAAACATTCTTATgcaatatttgtaataaaagtTACATAAATCAATTCGCTTTAGATCAGCATGTACGATCACACAGTGAAAAGAGTGAAACTTTTGTTTGTGAAATTTGTAGTAAAGTTTTCAATAGAAGTAGTAATCTGTATGCACATTTGAAAATCCATACAAGTGAAAAACCATACCAATGTGAAATTTGtgatagaaaatttatatcaaaatcaCGTTTAAATATCCATTTGAAAGTACATACCGGTGCGAAACCATTCAATTGTAATCTTTGCGATGccaaattttcagtaaaagGCTCATTGAAGGCTCATTTTCGGATACATAATGACGAGAAACCATACAATTGtcatatttgtaataaaagtTTCCGAGTTAAATGTGCTTTAACTGTACATTTAAGAGCACATAACGATGAAAAACCGTTTATTTGTAACGTTTGTAATAAAGGTTTTCGTTTGTATGAAAATGATCCATTTCCAAAAGTTTCATGTACGGATTGTTATGAGAAACTGGTACATTTTTACGATTTTcgtttattgattttacaaGCTGATTCGAGATTCCGTCAAGAATTGTACAATAGTAATTTGAGCAATCAAGTGAAAATTGAAGTGAATGACCATTCAGCTGAAACTGATAAAAAAGACTCCGATGATAATCTTAGTAACATAAGTGATAATGATCAAGAATTGGAGGATAACGAAAAACGAGATTCTCACACTGAAGAAGCTGTACAAATCGACAGAGAAGAGGCATCTAATTCAGATGATAATGAAACATCAGCAAAAAAAGTCCACAATTGTTGTCTTTGTGAAAAAACTTATTGCTCTAGATCAAAATTGAATGtacatttattgaaaattcatcaagcCTATGCCTGCAAAAACTGTAATGAGACTTTCCCAACAAAATCAGCTTTAACTAATCACTTGGACGTACACAAAATcaaagaaatcaatcaatgtAATATCTGTAATAAAACTTTCtcattgaagaaaaatttgaaaacacaCCAGAGAGTACACACAGGTGAAAAGCCGTATCAATGTGAAACTTGCTTGAAATCGTTCACTTCAAGTTATTCGCTGAAAGTACACCGGAGAATACATACAGGTGAAAAACCGTACCATTGTAATATTTGCGGTAGGGATTTTGTATTTAGGCAGAATTTACGAGCACATTCGCGACTCCATACCGGCCAGAAACCGTATCAATGTGATATTTGTGGTAAAAGTTTTTCGGATAGCATTATTTTAAGGAATCATAAATTTGCACATACAGGCGAGAAACCATTTAAATGTAATATTTGCGGTAGGAATTTCGCATTTAAAAACAATCTACGGCATCATTTACGATCGCATAGTTTTGCTGCAAAACGTGATGGTAACAATTCTGAAAAAAGTGTTTTCAAAGttgaagaattaattgaatattcaacaaatgataatggtgagaaattgtttatttgtagCGTTTGTAAAGAACCGTATAAAGATGAAAATGCTTTAAAGCGACATCTACAACGGATACATAGTGGGGAAAAAACGCATCAATGTACCGCTTGTTGGAAAACTTTCACTTCCAGTACATCATTAAAAGGACATTATAGACTCCATACAGGTGAAAAACCATACCACTGTAATATTTGTGGTAAAGATTTTGTATTTAGACAAAATTTAAGAGCACATACGAAAGTACATACAGGCGAAAAACCGTACAAATGCGATATTTGTGGCAAAAGTTACAAACATAGTTCATCTCTAAATTCTCACATGAATGAACATACAAAAGCTGAAAATATTCCAGAGAAAAAATTCACCTATATGTGCGAATTTTGTAGTAAAGTATTCCATAGAAGTTGTCATTTGAGTGCTCATCGACGGATACATTCAACTGAAAAACCGTATCAATGTGATCTTTGCGGGAAGAAATTCGTATCCAAGCCACGTTTAAAAGTACATATGAAACTACACACTGGCATAAAACCGTATCAATGTAATATTTGTGATGCAAAATTTGCAGCTAGTGGTACTTTAACGTGTCATTTACGGATACATAGTGATGAGAAACCGTTCAGTTGTCATATTTGTAATAAAGGTTTTCGTGTAAAATCAGCTTTAACTGTACATTTGAGACTGCATAGTGGCGAGAAACCGTTCGTTTGTGAGATTTGCAATAAAAGCTTTCGTTTAAGTGCTGCTTTAAAGATACATATATCAACACATACCGGTGAAAAACCGTTTGTTTGTGAAATTTGTCATAAGGGATTCGCACAAAAATATTGCCTAAATAAGCATTTCAAGAAACATACAAATAGAAATAAGGAGggaatagaacaaaaaaatatctaa
Protein Sequence
MKLVHNVMLLDVDRNEEEFDNVDTENQVEDSRSEREQQSSGIDKKKSNENNTTADNVGNNSSDSRDSNENEEINFVEPCKVEIEEKLYQSEKDQSSNSDLDKDGTTKKSHDCSICEQNFRYKSELNAHLKAEHGSNTCNICNKTFSTKSYLKTHLDIHKDEKLHQCNICGKTFTLIQNLKTHQKIHTGEKSHQCNICSKTFTSSTTLKVHFRIHTGEKPYHCNTCGKDFSSFTSSTTLKVHFRIHTGEKPYHCSICGKDFSVRENLKKHMRVHTGEKPYQCDICGKSYTNSTSLKSHKSKHTEIDYNTDKNLSLDDVTSQNNDKTFLCNICNKSYINQFALDQHVRSHSEKSETFVCEICSKVFNRSSNLYAHLKIHTSEKPYQCEICDRKFISKSRLNIHLKVHTGAKPFNCNLCDAKFSVKGSLKAHFRIHNDEKPYNCHICNKSFRVKCALTVHLRAHNDEKPFICNVCNKGFRLYENDPFPKVSCTDCYEKLVHFYDFRLLILQADSRFRQELYNSNLSNQVKIEVNDHSAETDKKDSDDNLSNISDNDQELEDNEKRDSHTEEAVQIDREEASNSDDNETSAKKVHNCCLCEKTYCSRSKLNVHLLKIHQAYACKNCNETFPTKSALTNHLDVHKIKEINQCNICNKTFSLKKNLKTHQRVHTGEKPYQCETCLKSFTSSYSLKVHRRIHTGEKPYHCNICGRDFVFRQNLRAHSRLHTGQKPYQCDICGKSFSDSIILRNHKFAHTGEKPFKCNICGRNFAFKNNLRHHLRSHSFAAKRDGNNSEKSVFKVEELIEYSTNDNGEKLFICSVCKEPYKDENALKRHLQRIHSGEKTHQCTACWKTFTSSTSLKGHYRLHTGEKPYHCNICGKDFVFRQNLRAHTKVHTGEKPYKCDICGKSYKHSSSLNSHMNEHTKAENIPEKKFTYMCEFCSKVFHRSCHLSAHRRIHSTEKPYQCDLCGKKFVSKPRLKVHMKLHTGIKPYQCNICDAKFAASGTLTCHLRIHSDEKPFSCHICNKGFRVKSALTVHLRLHSGEKPFVCEICNKSFRLSAALKIHISTHTGEKPFVCEICHKGFAQKYCLNKHFKKHTNRNKEGIEQKNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-