Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0064 15 5.4 3.1 14 29 30 45 24 56 0.83

2 7 0.016 39 4.1 1.9 16 40 60 81 50 86 0.81

3 7 0.0011 2.7 7.8 2.6 5 40 78 110 74 112 0.83

4 7 0.0049 12 5.7 8.9 2 40 104 138 103 141 0.89

5 7 0.0033 7.9 6.3 6.1 17 29 146 158 139 197 0.86

6 7 0.00018 0.42 10.4 4.8 14 41 199 223 191 225 0.79

7 7 0.0063 15 5.4 5.0 12 40 225 250 217 253 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0064	15	5.4	3.1	14	29	30	45	24	56	0.83
2	7	0.016	39	4.1	1.9	16	40	60	81	50	86	0.81
3	7	0.0011	2.7	7.8	2.6	5	40	78	110	74	112	0.83
4	7	0.0049	12	5.7	8.9	2	40	104	138	103	141	0.89
5	7	0.0033	7.9	6.3	6.1	17	29	146	158	139	197	0.86
6	7	0.00018	0.42	10.4	4.8	14	41	199	223	191	225	0.79
7	7	0.0063	15	5.4	5.0	12	40	225	250	217	253	0.81

Coding Sequence: ATGGATGACGATAAAAGTGATAAAATCGATGATGATTTCGTTGATAATTCTAATGAAGATTTAGAGGAAGAGcaacaagaaaataataaaaataactgtcAATGTAAAGTCTGTGGTAAAAGTTTTTCACAAAAAGGCTATTTAGCCGTACATTTGAAAGTACATACAGGTGAAAAACCATACGAATGTACAATTTGTAGAAAACGTTTTCTACAAAAAGTTAATTTAAAAACTCACTTAAAAGTACACAATTTcaaagagaaattattgaaatgtaaATTCTGTGATGAAGAATTCCAACAAGAAACAAATCTCTATCATCATATAAAACTACATAATGATGATAAACTACATGAATGTCATGTATGTAAAAATCATTTCTCATCGAAAAGTAGTTTACGTCGTCATTTAAGAGCCCATACTGGCGATAAACCGAACGAATGTAATATTTGCGGTAAACGTTTTTCACGTAAAGAATACGTACGTTTACATTTGAAAACTCATACGGGTGAAAAACCgtttatttgcaatatttgcGGTGAACGTTTCGCACAACGGCCCCATTtggaaaatcatctaaataCGCATAGTGGTGAAAAACGTTACGAATGTAATTTATGCCATAAACGCTATACACGTAAAGCCGATTTAAAATATCATTTAAATACACATACTGGTGAGAATCTATTTAAATGTAATGTTTGTGATAAATGCTTCtcatataaaaaacaattgaatcgacATTTGAAAATACATACCATCGACAACACGattctacaacaataa
Protein Sequence: MDDDKSDKIDDDFVDNSNEDLEEEQQENNKNNCQCKVCGKSFSQKGYLAVHLKVHTGEKPYECTICRKRFLQKVNLKTHLKVHNFKEKLLKCKFCDEEFQQETNLYHHIKLHNDDKLHECHVCKNHFSSKSSLRRHLRAHTGDKPNECNICGKRFSRKEYVRLHLKTHTGEKPFICNICGERFAQRPHLENHLNTHSGEKRYECNLCHKRYTRKADLKYHLNTHTGENLFKCNVCDKCFSYKKQLNRHLKIHTIDNTILQQ

Sequence clustering based on sequence similarity using MMseqs2