Scau012563.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010009034.1:144-524[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-08 0.00012 21.4 0.0 1 38 16 52 16 58 0.94 2 2 0.24 3.5e+02 0.7 0.0 25 34 86 95 86 101 0.83
Sequence Information
- Coding Sequence
- ATGCCGCGAACTTACAAACGAAAGGCTCCAGACAGATGCGTCGTTACGAATGATCAATTTGATGCTGCTAAATTATCAATCTCACAAGGTATAAGTCAAAGAAAAGCGGCAGCACAAGTTGGAGTAAAAGAAAGTACTCTCAGAAAAAGACTAAAATGTAGCTCAACTGCAACAAGCTTAGGAAGATTTTGTGTAACATTCACCCAAGAtcaagaaaatgaaatattcaattatctGAAAAAATGTGACGATCTTTATTATGGTCTCAATATGACAACTCTCAGGGCACTAGTTTTTGAGTATGCTAAGGCAAATAATATTCCTCACCgcttcaaaaaaattctaagaTGGCTGGGCGCGATTGGGTATATGGCTTCTTGA
- Protein Sequence
- MPRTYKRKAPDRCVVTNDQFDAAKLSISQGISQRKAAAQVGVKESTLRKRLKCSSTATSLGRFCVTFTQDQENEIFNYLKKCDDLYYGLNMTTLRALVFEYAKANNIPHRFKKILRWLGAIGYMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -