Scau000544.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- bab2
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000017.1:76033-80467[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-16 3.4e-13 48.8 0.0 2 42 387 428 386 431 0.95
Sequence Information
- Coding Sequence
- ATGACGATGCAACAATATTGTTTACGTTGGAATAACCATCAACCGAATTTCATTTCTGTATTTTCTAGTCTATTAAATAGTGAATCACTAGTGGATGTTACTTTAGCTGCTGAAGGCCGACATTTACAAGCACACAAAGTCGTATTATCAGCATGTAGTTCTTATTTTCAATctttattcacaataaatccATGTCAACATCCGATTGTTATACTAAAAGATGTAAAATTTGCCGATTTGAAAGTTATGGTAGATTTTATGTATTATGGTGAAGTGAATGTATCACAAGAACAATTACCACATATACTTAAAACTGCAGAAATGTTAAAAATTAAAGGTTTGGCAGAAATACCTGTAGATCAATCTGTAGCAAAAGCACAAAATAGTTCATCAGATAAAGCTGAATTATTAACACCTGGCGATTCCAATTGGAGTTCCGATGGAGGACCACGACAATCATTATCACCATCACCATGTCCACTTTCGCCAAGTAGTAAAAGaaaacGATTACGAAAATCATCAACTGGATCCGGATCAGGCTCAACTGAACGTGCATCTGATGATCATCAATCAAGTGAAGTTACATTGACATCATCAACTAGTAGTGTATTAGGTACTGTTATTAAAACAGATCCTGGTGGATATGTCTCCGATAGTAGTagtattttacaaaaaacaaaacaacacagTAGTGATTCGGAATTACAACGTGGAAGTTCACATGAAAGCGTCGAAGGTGAAATGCATCAAGTCACAttgCAAGTACCTCAAGAAGTTAGCGTTCAACATAGTATAGAAAATACTCCAGCTACTGTGGAAGTGGCCGGGCCTTCATCTTCAGCCACATCACAATTAACTCTAACTGGCATGCAATGGAACGTAATGGATCATACAGCTTATGCTCAATTTACATCCTGTACATCACCTCCGACAGCTGCATTACCCccaaatcaacaatataataataataataataataatcatagtaataataatagtaataataataataatcatcatcatcatcaatgtcCGCCGAATATGAATCAAACAAATCCACCACCATCACCGAATACTGTACattgttatcaaaatcaaataaatcattcaCCACCTCAAATGATACATAAAAGAAAGCGCAGTATAAATCCTCAAGGTGATGAGAATTTTATGAGGGCCTTGGATGCTGTACGATTTGGTGGTATAGGTTTTTGTAAAGCAGCCCGTATTTATGGTGTTAATAATCGAACATTATGGTTAGAATATAAAAAACGTGGCTATCCAAATTTTCGTTTAAgtataaaaaatcgaaaacaagaTAAtctaccacaacaacaacaaagatcaattgataataatcaaaatcatcaatcagtaactgtaacaacaacaacatcaacaacaataccaccaccaccgacaacaacaacaactagtCCATCACCGCATAATGAACATGTTGaacataaaaatgatgatatgtgtccgccaccaccaccatctaCAAATCATCCAGTCGCTTTAATTAGTAGTGCTTTTTTCGATGGTAAACATGTTGATTTAGGAACGGTGTTACAAAGGCCGAAATATTTAGATGGTGCCGTAATTAATACACCACAAGAAAGATCAACAACATCGTCAGCtataacaacagcaacaacaacaacaacagttacAACAACACAAGCCCAACAACGTACACAACAATTGGTTATGGGTACAAAACGTGGACGTTTCTTAATGCGTCAACCACGTATTAAACGTGAAAGTGATTCAAGTCAACTAATAGATAATGAGCCATTATCACCGCAGTATTTATCGGTACCAGTTAAAGTTGAACGACAATGTTCAGAACCATTACCGGCTATATCACCACCTCCTGGTAATTTATTAACTGTTCCTGGTGCTGTTTTAGTTAAACAACATTCACATCCATTGTTGCCGAGTCAAACACAAAAATCgTTATCGCCACCTTTACATATACAGTTAATACCTCAATTACAAACAGTTGAAACTGgagtaacaacaacaacaatagctGAACGTGCTATAAGTCCGATTGTTGTAGGATCGGATCCTTTAGCTATCACAACAACTGAAATTCCTTTAAGGGGAGATAATGCtacaattttaacaacaacaacaaatttaaggccaaaatttgatgaattaaaacGAAGTGCTTCATCACCACAgacTAGTACGAGTAGTAGATCGAGTCATTGTCCAGTAGTTCGTCCTGGCCCAGCTCTTGgttgtaattattgttggaatacGGTTGATACTCATGGTAGAATTTTAAGACGtaaaacaaaatatcattGTCCAGAATGTCATACAAATTTATGTATAGTACCATGTTTTCAAGAATATCACGAGAGACATgttagtaataatagtaataataatagtggtaatagtaataataataataataatggtaataataataataataatacaacaaatcaaacagaTCCTGTTGCTTTAACAACATCTGTAATGCGTGTATTTCCGAAAACAACATCAATGTGA
- Protein Sequence
- MTMQQYCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFADLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEIPVDQSVAKAQNSSSDKAELLTPGDSNWSSDGGPRQSLSPSPCPLSPSSKRKRLRKSSTGSGSGSTERASDDHQSSEVTLTSSTSSVLGTVIKTDPGGYVSDSSSILQKTKQHSSDSELQRGSSHESVEGEMHQVTLQVPQEVSVQHSIENTPATVEVAGPSSSATSQLTLTGMQWNVMDHTAYAQFTSCTSPPTAALPPNQQYNNNNNNNHSNNNSNNNNNHHHHQCPPNMNQTNPPPSPNTVHCYQNQINHSPPQMIHKRKRSINPQGDENFMRALDAVRFGGIGFCKAARIYGVNNRTLWLEYKKRGYPNFRLSIKNRKQDNLPQQQQRSIDNNQNHQSVTVTTTTSTTIPPPPTTTTTSPSPHNEHVEHKNDDMCPPPPPSTNHPVALISSAFFDGKHVDLGTVLQRPKYLDGAVINTPQERSTTSSAITTATTTTTVTTTQAQQRTQQLVMGTKRGRFLMRQPRIKRESDSSQLIDNEPLSPQYLSVPVKVERQCSEPLPAISPPPGNLLTVPGAVLVKQHSHPLLPSQTQKSLSPPLHIQLIPQLQTVETGVTTTTIAERAISPIVVGSDPLAITTTEIPLRGDNATILTTTTNLRPKFDELKRSASSPQTSTSSRSSHCPVVRPGPALGCNYCWNTVDTHGRILRRKTKYHCPECHTNLCIVPCFQEYHERHVSNNSNNNSGNSNNNNNNGNNNNNNTTNQTDPVALTTSVMRVFPKTTSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00841951;
- 90% Identity
- iTF_01366438;
- 80% Identity
- iTF_01366438;