Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986058.1:14433919-14445345[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.72 1.2e+02 4.7 1.5 3 21 508 526 506 526 0.89

2 15 1.4 2.4e+02 3.7 0.2 1 20 585 604 585 609 0.90

3 15 2.6 4.3e+02 2.9 0.2 1 23 663 687 663 687 0.93

4 15 3.2e-05 0.0053 18.4 0.4 2 23 781 803 781 803 0.95

5 15 0.01 1.7 10.5 7.1 1 23 837 859 837 859 0.98

6 15 0.011 1.9 10.4 5.8 2 23 872 893 871 893 0.97

7 15 0.3 50 5.9 1.9 3 20 904 921 902 923 0.93

8 15 0.0062 1 11.2 1.2 1 23 936 959 936 959 0.96

9 15 0.15 25 6.8 4.2 2 21 1007 1026 1006 1029 0.88

10 15 0.02 3.4 9.6 1.6 2 21 1073 1092 1072 1093 0.93

11 15 0.8 1.3e+02 4.5 2.3 1 19 1165 1183 1165 1183 0.94

12 15 0.0005 0.083 14.6 5.1 1 22 1194 1215 1194 1218 0.90

13 15 0.005 0.83 11.5 0.8 1 20 1272 1291 1272 1294 0.94

14 15 8.5 1.4e+03 1.3 2.3 3 23 1385 1405 1384 1405 0.94

15 15 0.047 7.9 8.4 2.2 2 23 1472 1493 1471 1493 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.72	1.2e+02	4.7	1.5	3	21	508	526	506	526	0.89
2	15	1.4	2.4e+02	3.7	0.2	1	20	585	604	585	609	0.90
3	15	2.6	4.3e+02	2.9	0.2	1	23	663	687	663	687	0.93
4	15	3.2e-05	0.0053	18.4	0.4	2	23	781	803	781	803	0.95
5	15	0.01	1.7	10.5	7.1	1	23	837	859	837	859	0.98
6	15	0.011	1.9	10.4	5.8	2	23	872	893	871	893	0.97
7	15	0.3	50	5.9	1.9	3	20	904	921	902	923	0.93
8	15	0.0062	1	11.2	1.2	1	23	936	959	936	959	0.96
9	15	0.15	25	6.8	4.2	2	21	1007	1026	1006	1029	0.88
10	15	0.02	3.4	9.6	1.6	2	21	1073	1092	1072	1093	0.93
11	15	0.8	1.3e+02	4.5	2.3	1	19	1165	1183	1165	1183	0.94
12	15	0.0005	0.083	14.6	5.1	1	22	1194	1215	1194	1218	0.90
13	15	0.005	0.83	11.5	0.8	1	20	1272	1291	1272	1294	0.94
14	15	8.5	1.4e+03	1.3	2.3	3	23	1385	1405	1384	1405	0.94
15	15	0.047	7.9	8.4	2.2	2	23	1472	1493	1471	1493	0.96

Sequence Information

Coding Sequence: ATGACTGAAAAGCCGGAAAATTTTGACGTGTTGTGCAGGCTGTGTCTCAGCATTGACGGCCGAGTCCCGATTTTTCCAGACGGCCAAAATAAGGACGACCTCGCTGCCCGGATTTTCGAATGCGTATCTATTCAGgtGAAACGAGATGGCAAATTCCCTCTTAACGTTTGTTCTCCCTGCCTGGCATGTATCGAATCGTGGTACGCCTTCAAAGAGAAGTGTCACAAAACTCAAGATGCTCTTTCGTCAATGGTTGCTGGAACGGTTTCATTGGGAgaTGGCATTGCTCTCTGCAACGGGGATTCTGAAGCTGTTGTGAAAGATTCGATGGGCTCCGATGAAAGTAATGAAAGTTTCAATGATTTAGCTAAGGCTGCAAATGACATTAGTGATGAAGGGAGTAGGGATGCTGAAATATCTGGCCCGGACGGTATGCCTGAAGTTGGTGCAGGTGGCAGCAATTCAGAAATGCCATGTGACATCGGGCAGCCTGTCATCGAGGATGGATCTTCTGAAGCGTCGCAGCCCCAACCTGAAAACGGCGATGACACCCAGACGAGTATTTCAGAAACGGGAAAAGCGGGAACAGACAAACCCGTGGATTCAGCAGCGGTGGAAATTCCTGAAGGGTCTGAATCACTTGAAAAGTCGGACGGTCGCACGTCAGAGACCGATATATTGAGAACCCACCTGACGGCCCATAGGGAAGAAGAGATTTCGGATATGGAAAACGATTCCAGGGAAGACCTTATGGAGGAAGATGAAGAGGAAGAATATGATGATTTTGTAGATGAAGAAGAATTCGATGAGCCTGGTTCAGCGCAGCTCGTAAATCCCAAGTTTGCATCCAAAACAGTAAACTCCAATCCGGATTCTTCTCTGTCTTCTGGCGCTGTTCAGACGGTCGATTTGTGCGAAGATGACGACGTATGTGTCGTGGAGCCggaaatacagaaaatcacCCTCGATGGTGCAGATTCTAACGACTCGTTGATCAAAGAACCTGCTTCAGAAAATCCGGATGTGCTAAAGTCAGCTCAACCAAAAGGCGAGATCAGTCTCAGAATCGAGTCTACTGTCACTCTTCCTGGTGATTTAGTGGAAAAAGGCGAGCAACCGTCAGAGTCTAGAGGTGATGATGAGGCTGCAGCTCCTGGTGATGCCAAAAACGAACAGATTGCAACTGCCAAGTCTTCAAGAGACAATTCACCAGACCGAATGAGCGTTGATGGGTCGATGGCTGAAGATGACCAGTTTGAAGATAAGTCTTCGCTGTTGCAATCACATCCTCTTGGAGAGAACAGCAGGGCCACTCCAGATTCAACTATGGGCAGCAGCAACACCGAAGAACCCGAGCCTTTAATTCCGaTGGACATCAAACAAGAAGTCGACAGAGGCTACGCTGATGAAGATGGAAGTTTGGCATACAATCAAGTTAAGAGCATCCAAGGTAAAAGTAGGGAGGAGTATGAAAGAGAGCTTCTTTCAGGAGATACCACTGTAGATGTAAATAATGATCGATGCATAATTTGTGATCACAAATTTCATAACATCAGTTCTCTTCTGAGACATACTAAGTGCAAAACTCATGTTATCAACAAGACAATCGTCATGAAGAGGGAAATGGGTGCGCCGATCGATCCTAAAACGCAAGCTCTCCATGACCGTCATATGCAATCATACAGAAACCAGTGGAACACTGGTAGAAGGAGGAGTTATCCATCTCAAGGCATTGGCGCGGGTCCTAAGAGATTTGCTTGTAAGCTTTGTAGAGTTGTAGCTATATCAGCTCGGGATTTGGAGCGACACAAAGGAAGCAAGAAACATAAGTTGTGCGTTATGATGGGCGGTCTTCCAGTTGATGAGGGAGCACTTCAGAAACCCCCAGCTAGGAAGATAATCAAACCTCAAATTTTGCAGTACAGCCATGAAGAGCCTCCTCAACATAAAATATCTACTCCTAAACTTCAGCATGGGCAGCGGGAATATATTTGTCCGATCCCTAACTGTGGTTATGTTTGTTATGAAGGATCTATTCTTTTGACTCACATGACGTCGCATGGTATTCAAGGCCAAGGGTCATCACCCCAGCTAACCCCAATGCAACTCCCTTCTCTTACTCACAAACCTACTCTTCCAACATCAGCACCATCTCTTCCGATAGAATCAAAACCAGCATGTCGATCTGGCAAGTACGAAAACTTGTTTTGCAAGTATCACAACGTATACTTTGAAACTGCACGTGGTTATCTTAACCATATCCGGACTTGCACCATGGCTCCTCCTATATCTACTTTTCTGAAGAAGGAGTACTCACAGTCCTCTGAGAGTCTTCAACGCTACTGCAAGTTATGTGACCTTAGTTTCAGTACATCTGACATGCTGATACAGCACATGAGTGTATACCACAAAGGTGCCACTAACCAGAAAGAGCATGATTTGTCCAAATACAAGGTGATTGCGCCTGTATATACGCCAAAGGCTCTGCCACAAGCAAAGTCCAGAAAACACAAATGTCACCTTTGCGGTAAAGTGTTCAATCTGTTGCACTCTTTGAATTTCCACCTCAGAACTCATCAATCGCATGTTACTAGCTCTACTTCTACAAACACAACGTGCAAAGTATGCAAGAAGAGTTTTTCTACCCGGAAATCGTGTGCTTCACACTTGAAAACCCACTTCCTTCCACCTGGCTCGAACAAACTGTTTTGTTCCACCTGTTACAAGACGTTTGACACAAGAGTGGAAATTTGTAAGCATAGATACGATGGAACTTGTCATGGTCCAGCAGTTTCAGGAGAGTCGTTCCCTTGTGATCAGTGCAGCTCATCCTTCAAAGATGCAACTACTCTCAGTAATCATAAATTGAGATTTCACCCTGATATTAAACAAGAAAAGATCGACGAAGAGGAAAATCATGAACAAgcagaaaaagaagaagttgAGGATCAAGATTATCACGAGGAGCATACTCCTCAGCCAGAGGTACCTCAAGTGACTTATGAAGATGAAATAACAAAGTGTATGCTGTGTGGCAAAGAATTCAGTTCTTTCTTCAGTATGAAGCGGCATTGTCGTTTCATCCACAGGATGCCAGAAAACAATATACTTAAAATGGCAGCCTCTATGGGCATTTCACCATCCAAAATGCGTGGTTCTCCGGCTCCAGGCCAAGGAGGACCACAAGCCCCTAAAAAGACTTTGCCGCACACCAAGTCTTGTAACCGATGCGGTGAAACGTTTTATCATACAAAGCAGTTAGTTGAACACCACCAGATTTGCCAAGAACCGGTAAGAGAGGCTTGTCAGCAATGCGGAATGGCAACTGATGCCCAGGGTTGTCCTAATTGTGAAGGTCGAGCTGAAGATCTGAAGGACAATAGTGAATCCGGCACGCTCTTGTTCAAATGCCCTATCGGCCATATGAGTTTCAATGATGAAAAtgctatgctcaagcattacaGTTACTGCACTGGTAAATGTGGGCCGTACTTCGAATGTGGATCGTGCGGCTGTGAGTTTCGATACAGGAAGAATTTCGACATTCACGATTGCGCTTTGAGCAAAAAGAAGACCACCTACGATTGTACGGAATGTCACCGTTCTTTCACCAAAAAGTCGTATTTGATGAACCATGAAATGAAATGCCCGCATTTGAACTCGCCGGGTGGTTTCTCTGAGCCTTCTGCTGCTCCTGCGGCTGTACCTCCGCCGCAGCCAACGTCGAGTAACTCTGTGAAGAAAACAAGGCAGAGTTGTCCTGATGAGCCTCACGTAGAACTTCCTACCCATTCCGATAAGCCTTTGGAAGTATTCACTTGTGAACAGTGTGAAAAAATATTCCACTCCAACAAAGCTCTGAACGGTCATATGTGGGTCCATAAAAAGGCAACTCCAGAGAATAAGATGTTTTGCAAGTTTTGTGGCAGGGAGAATTTGACGTTGTCCAATTTGTACAGTCACGTTTACAAGTGTGTAAGGTCGTTGTTCATGACAGAAGAAGTTCTTACGTGTGAAGACTGCAGCACATTCCTCAGTCGGTATGACACTCCGAAAGAACTATCTGCCAAGCTCCACGTCCATGTTCTTAATTGCTATCCGATCCCCTGGTACCAAAACGAAGGTGAAGTCGAGGGTTCAGATAAAATCCTCTGCTACATTTGCTGCCACGCCTTCTCGTCCGTCGAATCTCTCACTATACACAAAATCCAACACAAAAGAGTCAAAGCTAAAAGGAGCTCGTCGTCCCCGTTCTGTAAATCGAATCCCAAAAAACGTCCCAAGTACGGACATTTTTCAGCTCCCAAGATTGAAATCGACATCAACGATATGATTGAAGAAGAGGTCTTCGGGAGCGAGGACAGCTCCGCTTCTGCCAGCACGACCAGCACTTCGGCcaccaaattcattttgaactgcCAGGTCTGCAGCAGGCAATTCCACAACATCGATAAATTGAGGAACCACGAAAAAGTTCACGGGATCGTCCGCCAAGTTGTCAATGAGTCCGAAGACGTGGACGTTGTAAACGAAGCGTAG
Protein Sequence: MTEKPENFDVLCRLCLSIDGRVPIFPDGQNKDDLAARIFECVSIQVKRDGKFPLNVCSPCLACIESWYAFKEKCHKTQDALSSMVAGTVSLGDGIALCNGDSEAVVKDSMGSDESNESFNDLAKAANDISDEGSRDAEISGPDGMPEVGAGGSNSEMPCDIGQPVIEDGSSEASQPQPENGDDTQTSISETGKAGTDKPVDSAAVEIPEGSESLEKSDGRTSETDILRTHLTAHREEEISDMENDSREDLMEEDEEEEYDDFVDEEEFDEPGSAQLVNPKFASKTVNSNPDSSLSSGAVQTVDLCEDDDVCVVEPEIQKITLDGADSNDSLIKEPASENPDVLKSAQPKGEISLRIESTVTLPGDLVEKGEQPSESRGDDEAAAPGDAKNEQIATAKSSRDNSPDRMSVDGSMAEDDQFEDKSSLLQSHPLGENSRATPDSTMGSSNTEEPEPLIPMDIKQEVDRGYADEDGSLAYNQVKSIQGKSREEYERELLSGDTTVDVNNDRCIICDHKFHNISSLLRHTKCKTHVINKTIVMKREMGAPIDPKTQALHDRHMQSYRNQWNTGRRRSYPSQGIGAGPKRFACKLCRVVAISARDLERHKGSKKHKLCVMMGGLPVDEGALQKPPARKIIKPQILQYSHEEPPQHKISTPKLQHGQREYICPIPNCGYVCYEGSILLTHMTSHGIQGQGSSPQLTPMQLPSLTHKPTLPTSAPSLPIESKPACRSGKYENLFCKYHNVYFETARGYLNHIRTCTMAPPISTFLKKEYSQSSESLQRYCKLCDLSFSTSDMLIQHMSVYHKGATNQKEHDLSKYKVIAPVYTPKALPQAKSRKHKCHLCGKVFNLLHSLNFHLRTHQSHVTSSTSTNTTCKVCKKSFSTRKSCASHLKTHFLPPGSNKLFCSTCYKTFDTRVEICKHRYDGTCHGPAVSGESFPCDQCSSSFKDATTLSNHKLRFHPDIKQEKIDEEENHEQAEKEEVEDQDYHEEHTPQPEVPQVTYEDEITKCMLCGKEFSSFFSMKRHCRFIHRMPENNILKMAASMGISPSKMRGSPAPGQGGPQAPKKTLPHTKSCNRCGETFYHTKQLVEHHQICQEPVREACQQCGMATDAQGCPNCEGRAEDLKDNSESGTLLFKCPIGHMSFNDENAMLKHYSYCTGKCGPYFECGSCGCEFRYRKNFDIHDCALSKKKTTYDCTECHRSFTKKSYLMNHEMKCPHLNSPGGFSEPSAAPAAVPPPQPTSSNSVKKTRQSCPDEPHVELPTHSDKPLEVFTCEQCEKIFHSNKALNGHMWVHKKATPENKMFCKFCGRENLTLSNLYSHVYKCVRSLFMTEEVLTCEDCSTFLSRYDTPKELSAKLHVHVLNCYPIPWYQNEGEVEGSDKILCYICCHAFSSVESLTIHKIQHKRVKAKRSSSSPFCKSNPKKRPKYGHFSAPKIEIDINDMIEEEVFGSEDSSASASTTSTSATKFILNCQVCSRQFHNIDKLRNHEKVHGIVRQVVNESEDVDVVNEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -