Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986060.1:12398098-12401094[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.31 51 5.8 1.6 1 23 131 153 131 153 0.98

2 15 0.005 0.84 11.4 2.7 1 23 171 193 171 193 0.98

3 15 4.3e-05 0.0071 18.0 1.4 3 23 200 220 199 220 0.98

4 15 2.6e-05 0.0043 18.7 3.2 1 23 226 248 226 248 0.99

5 15 0.35 59 5.6 6.8 2 23 255 276 254 276 0.97

6 15 0.0002 0.033 15.9 3.7 1 23 282 304 282 304 0.99

7 15 0.024 4.1 9.3 0.1 2 23 311 330 310 330 0.91

8 15 0.0052 0.86 11.4 0.6 1 23 336 358 336 358 0.97

9 15 1e-05 0.0017 20.0 4.7 1 23 364 386 364 386 0.98

10 15 7e-05 0.012 17.3 3.2 1 23 392 414 392 414 0.97

11 15 0.00078 0.13 14.0 6.8 1 23 420 442 420 442 0.97

12 15 0.00065 0.11 14.2 2.8 1 23 448 471 448 471 0.95

13 15 3e-05 0.005 18.5 1.6 1 23 477 499 477 499 0.97

14 15 0.42 71 5.4 2.1 1 23 505 527 505 527 0.96

15 15 0.028 4.6 9.1 5.2 2 23 534 556 534 556 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.31	51	5.8	1.6	1	23	131	153	131	153	0.98
2	15	0.005	0.84	11.4	2.7	1	23	171	193	171	193	0.98
3	15	4.3e-05	0.0071	18.0	1.4	3	23	200	220	199	220	0.98
4	15	2.6e-05	0.0043	18.7	3.2	1	23	226	248	226	248	0.99
5	15	0.35	59	5.6	6.8	2	23	255	276	254	276	0.97
6	15	0.0002	0.033	15.9	3.7	1	23	282	304	282	304	0.99
7	15	0.024	4.1	9.3	0.1	2	23	311	330	310	330	0.91
8	15	0.0052	0.86	11.4	0.6	1	23	336	358	336	358	0.97
9	15	1e-05	0.0017	20.0	4.7	1	23	364	386	364	386	0.98
10	15	7e-05	0.012	17.3	3.2	1	23	392	414	392	414	0.97
11	15	0.00078	0.13	14.0	6.8	1	23	420	442	420	442	0.97
12	15	0.00065	0.11	14.2	2.8	1	23	448	471	448	471	0.95
13	15	3e-05	0.005	18.5	1.6	1	23	477	499	477	499	0.97
14	15	0.42	71	5.4	2.1	1	23	505	527	505	527	0.96
15	15	0.028	4.6	9.1	5.2	2	23	534	556	534	556	0.96

Sequence Information

Coding Sequence: atgaccaatgATATCAAGAAACACGGGTCTAATGAGGAGTGCTCAATTAAAGATCTGCCGGATTCAGATTCCGAGGTGACAGCTATAGTGAAAGTTGAAGTCAAAACTGAAGAATCTCATGAGACTGATATCCCTATTGAAGAAGAGCCCGACGACCCAGATGCAAGTTTTAAGAGATGCCCTGCCAACTCAAAGTTCAAATCTAGTCAGAACGACGTAAAACTTGGTGATCTACCAGCAACTATCAAAAAGGAGGACGGCGATGTAATTGAAGGAGGCGCCAGTGCGAAATTCCAAGTAACTATACTAGTCAAAGAACAACTGGTGCAACAGGAGTTAGATGCTAAGAGTGGCATAGGACAGAACTTCCTTTTCAGTGAAGATGTGAGCTACACGTGTGCCCATTGCCAGGACACTATAATTGGAAAGAAAAGACTGACATTGCATATTCGAAAACATCTACAAACTAAGCGATCACGacaagaacaaaacaaaaccaaGAAACGACCCTACGTGTGCACTATTTGTGATTATAGAGCTAGGTTGCAGTGCAATTTGAAATCCCATTTCCTTACTCACGGACCGAAAAATGAGGCATGCCCTCACTGTGACTATAAAGCATCGACAAAACACGCCCTCAGAGTCCATATAAGAGTTCACACAGGCGAAAAGCCTTATAAATGTACAGAGTGTAACTACACAGCTAGACAGCCTTCACACTTGAGGTCGCACAAGTTGACGCATTCGGGCGAGCGACCACAGCAGTGTCCGCACTGCGAGTTCAAATGCGCGACAAAAAGTCAAATGACCTGTCACATCCGAGGTCACACGGGAGAGAAACCTTTTCAGTGTCCTCATTGTGAATACAGAGCTGGATACACGTCACATTTGAAGAGGCATATAATGACTCACACTGGAGAGAGACCGAATAAGTGTCCTATTTGTGATTATAGAAGTGCTGGAAACCTGAGTGCCCATTTGCGAGTTCATGCTAAAGCTAAGAGGTTTTTCTGCAATGTTTGTGAATATAGTAGTGCAGAGTTGTCATCATTGAAGTCGCACACTTTAAGTCATACAAAACCAAAACTATTTTCATGCCCGCATTGTGATTTTGCTTGTTCGAGAAAATACTCGTTAACATCGCATTTACGAGTGCATACAGGAGAAAAACCTTATGCGTGTCCCTTTTGTGATCACCGCACGAGGCAACAAACGCATCTGAAAGTACATATCCGAGCCCACTTGGGTGACAAACCGCATTCGTGTACTGTGTGCAACTTCAGGTGCATTAACCGCAGCTATTTGAAACAGCATATGCGACAACACACCGGAGAGCGTCCGTACGTCTGCTACCACTGTGGATACTCCTCAGCCCACAGAGTCAGCCTTCAGCAGCACATCATGTTCAATCATTTCAACCAAAAGCCCTTTGCCTGCCCACACTGCAACTACAAGACAGCGGGCAAGTCCCAGTTGAAACGACATGTTCTCACTCACTCGGGTATCAGAGCCCATAAATGCGACACCTGCTCTTACAAAGGGCTGACTGCTGTTGATGTCAAAAGACATCAAAAGACTCATGGCAGCCGCAAACCTAACGTCTGCCCATTCTGTAATCACAGGACATCGTTACAGCACACACTTCAAAATCACATCAAACGAAAGCATCTGGGCTACCCTTACCCCAAACGAAAGTCGACATTAACACGTGAAAAGGATTGA
Protein Sequence: MTNDIKKHGSNEECSIKDLPDSDSEVTAIVKVEVKTEESHETDIPIEEEPDDPDASFKRCPANSKFKSSQNDVKLGDLPATIKKEDGDVIEGGASAKFQVTILVKEQLVQQELDAKSGIGQNFLFSEDVSYTCAHCQDTIIGKKRLTLHIRKHLQTKRSRQEQNKTKKRPYVCTICDYRARLQCNLKSHFLTHGPKNEACPHCDYKASTKHALRVHIRVHTGEKPYKCTECNYTARQPSHLRSHKLTHSGERPQQCPHCEFKCATKSQMTCHIRGHTGEKPFQCPHCEYRAGYTSHLKRHIMTHTGERPNKCPICDYRSAGNLSAHLRVHAKAKRFFCNVCEYSSAELSSLKSHTLSHTKPKLFSCPHCDFACSRKYSLTSHLRVHTGEKPYACPFCDHRTRQQTHLKVHIRAHLGDKPHSCTVCNFRCINRSYLKQHMRQHTGERPYVCYHCGYSSAHRVSLQQHIMFNHFNQKPFACPHCNYKTAGKSQLKRHVLTHSGIRAHKCDTCSYKGLTAVDVKRHQKTHGSRKPNVCPFCNHRTSLQHTLQNHIKRKHLGYPYPKRKSTLTREKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -