Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986059.1:10638979-10647506[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00047 0.079 14.7 4.1 1 23 261 283 261 283 0.97

2 11 1.5e-05 0.0025 19.4 1.5 1 23 289 311 289 311 0.98

3 11 0.00058 0.097 14.4 2.9 1 23 317 340 317 340 0.96

4 11 0.059 9.8 8.1 3.4 1 21 346 366 346 368 0.95

5 11 0.00015 0.025 16.3 1.9 1 23 374 396 374 396 0.99

6 11 8.7e-05 0.015 17.0 2.2 1 23 402 424 402 424 0.98

7 11 0.00054 0.091 14.5 0.8 1 23 432 455 432 455 0.97

8 11 0.00024 0.041 15.6 2.5 2 23 462 483 461 483 0.96

9 11 0.00035 0.058 15.1 0.3 2 23 490 511 489 511 0.97

10 11 2.5e-06 0.00041 21.9 2.6 1 23 517 540 517 540 0.97

11 11 6.7e-07 0.00011 23.6 1.7 1 23 554 576 554 576 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00047	0.079	14.7	4.1	1	23	261	283	261	283	0.97
2	11	1.5e-05	0.0025	19.4	1.5	1	23	289	311	289	311	0.98
3	11	0.00058	0.097	14.4	2.9	1	23	317	340	317	340	0.96
4	11	0.059	9.8	8.1	3.4	1	21	346	366	346	368	0.95
5	11	0.00015	0.025	16.3	1.9	1	23	374	396	374	396	0.99
6	11	8.7e-05	0.015	17.0	2.2	1	23	402	424	402	424	0.98
7	11	0.00054	0.091	14.5	0.8	1	23	432	455	432	455	0.97
8	11	0.00024	0.041	15.6	2.5	2	23	462	483	461	483	0.96
9	11	0.00035	0.058	15.1	0.3	2	23	490	511	489	511	0.97
10	11	2.5e-06	0.00041	21.9	2.6	1	23	517	540	517	540	0.97
11	11	6.7e-07	0.00011	23.6	1.7	1	23	554	576	554	576	0.96

Sequence Information

Coding Sequence: ATGTCGTGTTTTGCGCAGGTTGGCTGCGCATCCCACGTCGGCCATCTTGGGTTCCCATTTTCTTCTCTGTCTGGCTTGGTGAAAAGCAGCCAAGGGTTGCGTGTCGTGAAGGTGCCCGACACTTCGAGAGGAGCTGCTGGAGGAGGAGAAACCATCAacgaaatacaaaattatttggAAACGTTCAACAAGGAAATCGGCGAAGGCGATGCGTCGAACCCGCCAACGGCGCTGCCGACCACTGTCAAATTTGAAGAGGGCGCTGAGCAGCCCATTGTGGACACTGATGCCGCGGACACCGCTGGAGCTTACTACGTTGACCAGGCGACAGGCCAGTACTACTACGAGTCCAGAGGAGAAGACGGACAAAGGGTGATGACCATTGTGCAAGGGATACCGGAAGCAGCTGGAGTTGAAGAACAGTTTGTGTCAATAACATCAGGTGAAAACGCATCTGATGGCGAACAGCAGGCTACAGAAGATCATCAAGTCCAAATGATGGACGACAACGGACAAATGGTTTTGGGCTCTGGTGACTCTTACCAAACAGTCACAATCGTCCCCTCTGAGACGCCCAACGGCGAGGTCAGCTACGTTCTCATCGTTCAGCAGAACAAGGACAACAAAGACATGAAGGAAGACGACCAGGACTTGACTGTTTACGATTTCGACGATCAAGAAGAACCCAGCGCCGTGAGCGGAGCAGAATCTGAAGTCGAGGAAGACAAAAGCAAGGTGTTACGGCCTCTGCCCAAAAAATCTCAAACTGTTACACAAGCTCACATgtgcaattattgcaattacaCCAGCCCTAAAAGGTACCTCTTGTCTCGTCATATGAAATCACACTCGGAAGAGCGTCCTCACAAATGCAGCGTGTGCGAACGAGGTTTCAAAACGTTGGCGTCCCTTCAAAACCACGTCAACACACACACTGGTACTAAGCCCCACCGGTGTAAATTCTGCCAATCTGCTTTCACTACGTCAGGGGAATTGGTGCGGCATGTGAGGTACAAGCACACACACGAGAAACCTCACAAGTGTACGATATGTGACTACGCGTCTGTTGAGCTGAGTAAGATGCGGAATCATATGAGATGCCACACGGGAGAGCGACCCTACCAGTGTCCACACTGTACATACGCAAGTCCGGACACGTTCAAACTCAAGCGCCACCTCCGCATACACACAGGAGAGAAGCCATACGAGTGCGACATCTGTTACCACCGTTTCACCCAGTCCAACTCTCTCAAAGCCCACAAGCTCATACATAGCAttggtGACAAGCCGGTGTATCAGTGTGAGCTCTGTCCGGCCACTTGTGGGAGGAAAACGGATTTGAGGATTCACGTTCAAAAGCTCCACACATCCGATAAACCCCTCAAATGCAAAAGATGCGGGAAGCAGTTCCCTGACAGATACACCTTCAAGGTCCACAACAAATCTCACGAAGGTGAAAAATGTTGGAAGTGCGATCTTTGTCCATACGCTTCCGTATCCCAGAGACACCTGGAATCCCACATGCTCATCCACACAGACGAAAAACCTTACCAGTGCAAGCAGTGCGATCAAGCTTTTAGGCAGAAACAGCTGTTGAAAAGGCACCAGAATCTTTACCACAATCCGAACTATGTTCCCCCGCCGCCAAGAGAGAAGACTCACGAGTGCCCCGAATGTTCTCGAGCGTTCAGACATAAAGGGAATCTGATACGTCACATGTCAGCTCATGACCCCGAAAGCTCAGCTCAAGAGAAGGCGCTGGCCTTGAAGCTTGGCCGCCAGAAGAAGATCCAAATTATCGACGGACAGCAGGTTGAAGTGATGCCTGGCATTGACGACgacgaagatgaagatgaagagtCTGAAGGTGAAATGGACAGCTCTGTAATGGCTGTGGAAGGTTCTGACGGTCAGCAATACGTTGTTCTCGAAGTCATTCAACTTCCTGACGGCGAAGGCCAGCAAGTCGCCATGATCCGAGGTGAACATGCGATCGACCGCGCTGTGGCCGCGTTGAATTCGGCCACAGGTTCTGGCGTCGACGGCGAAGAAATTCTTCCGGATATAAAACCAGATTTGTCCGAAAAGAAGAGTGCGGAAATCCGCGAAGACATGCAGAACTGCTTTGGTTTCGACGAGGATGAAGAAGACAAAGAGGACGACGAAGGAGAAGAAAACGAGAAATCTGACCTCAGAGTCATTTCGTCTCTTCGGTAA
Protein Sequence: MSCFAQVGCASHVGHLGFPFSSLSGLVKSSQGLRVVKVPDTSRGAAGGGETINEIQNYLETFNKEIGEGDASNPPTALPTTVKFEEGAEQPIVDTDAADTAGAYYVDQATGQYYYESRGEDGQRVMTIVQGIPEAAGVEEQFVSITSGENASDGEQQATEDHQVQMMDDNGQMVLGSGDSYQTVTIVPSETPNGEVSYVLIVQQNKDNKDMKEDDQDLTVYDFDDQEEPSAVSGAESEVEEDKSKVLRPLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCQSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICYHRFTQSNSLKAHKLIHSIGDKPVYQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKQFPDRYTFKVHNKSHEGEKCWKCDLCPYASVSQRHLESHMLIHTDEKPYQCKQCDQAFRQKQLLKRHQNLYHNPNYVPPPPREKTHECPECSRAFRHKGNLIRHMSAHDPESSAQEKALALKLGRQKKIQIIDGQQVEVMPGIDDDEDEDEESEGEMDSSVMAVEGSDGQQYVVLEVIQLPDGEGQQVAMIRGEHAIDRAVAALNSATGSGVDGEEILPDIKPDLSEKKSAEIREDMQNCFGFDEDEEDKEDDEGEENEKSDLRVISSLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01500573;
90% Identity: iTF_00386628;
80% Identity: -