Scal041048.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986065.1:3229619-3257182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.026 4.4 9.2 1.5 1 23 124 146 124 146 0.95 2 18 6.4e-05 0.011 17.4 0.5 1 23 152 174 152 174 0.96 3 18 0.53 89 5.1 0.3 1 23 180 203 180 203 0.94 4 18 0.002 0.33 12.7 1.4 1 23 211 234 211 234 0.93 5 18 0.0028 0.46 12.3 2.9 1 23 242 265 242 265 0.96 6 18 0.0066 1.1 11.1 2.7 1 23 271 293 271 293 0.99 7 18 0.2 34 6.4 0.2 1 23 326 348 326 348 0.96 8 18 3.7e-05 0.0062 18.1 0.4 1 23 354 376 354 376 0.98 9 18 1.4e-05 0.0023 19.5 0.7 1 23 382 404 382 404 0.98 10 18 0.0085 1.4 10.7 1.4 1 23 410 432 410 432 0.97 11 18 1.4 2.3e+02 3.8 7.2 1 23 438 460 438 460 0.98 12 18 0.01 1.7 10.5 0.8 3 23 482 502 480 502 0.97 13 18 0.00014 0.024 16.3 1.3 1 23 508 530 508 530 0.98 14 18 0.0067 1.1 11.1 1.8 6 23 540 557 536 557 0.97 15 18 0.00024 0.041 15.6 0.6 1 23 563 586 563 586 0.92 16 18 0.00052 0.087 14.6 0.3 1 23 592 614 592 614 0.98 17 18 0.0025 0.42 12.4 1.3 1 23 620 642 620 642 0.99 18 18 0.0017 0.28 12.9 1.0 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- ATGTCAGAGGAGAGCGAAGTGGAGGGTGAGCCGGTCGGCAGCGACCTGTTGACTCTCGAGTTCGTACCGGATTTCGACTTCGAGGACGATCCCGGATCCGACTGGAGCCCAAGTGAAGATCCCAAACCGAAAAAGAGGAAGATCGCcgggaagatgaagaagaagagaggACCGCACCCCAAAAAGAAGTCCGGTACCGAAATTATCAGCTACGACAAAAACGTTGAATTCGTCATCATCAAAGAAGAACCGGAAGATGGCGATTCAAAGGaGCCGATGCTTGAGTGCTACGAATGCGGGTACAAATGCGCGAAAAGGCAGCGGCAGAATCTCGTTCGTCACATGGTCAAACACACAGGAGAGAAACCGTTCGCCTGCCAATATTGCGATTTCGCCACCGGCTACGAGCACGCCCTCAAGCGCCACACTTCACAACACACAGGGGAGCGACCATATTTGTGCAACTTATGCGACTACAAAACTGCCTACCCGTCTGCTTTGAGGAAGCACCTTCAAACTCACGACGaAGTGAAGCCGTACAACTGTGACCAGTGCGCTTTCTCAACTGTGTACGTCTCATCGATAAGGAAACACATATTGGCCAAACACGGTCCTGATGACGAGAAGCCCTTCTTCTGCGATCAGTGCGATTTCCGCACTGTACAGCGGCAGTCTCTCAAAAGGCACATCCTCGCCAAACACACAGATGAAAGTTTAAGGCCGTACAAGTGTGATTACTGCGACTACACATGCGTGCAGCGGTCAATAATGAAGAACCATATGATGGCGAAGCATTCTGGGTCCTACCTCTTCAAAtgtaaactctgcaaattcgagACCAACTACATGGTGTCCCTCAAAAGACACGTCCGGTCCCACGGTATTGATGACAAAGAAATTGGGGAGGAGTGTGAATCAGAGGCCGTCGATGGATCAGGTGCCGACCACGAAGTGTTCTTCAAAGGATCGCAGATCTACGAGTGTGAGATGTGCGAATTCAGAACTTTGTACCCTGCTGCCTTGAAGCGACATAGTATGATTCACTCAgGGGAAAAACCGTACGAGTGCAACATCTGTGATTATAAGTCGGCCTACAAATCTGCTTTGAAAGTGCATATTACTCGGCATGAAGACTTTCGGCCGTTCCCTTGCGACGAGTGTGATTACCGAGGAAGGACGGCCAACCACCTCATGAATCACATGAGGGTACACACAGGGGAGAAACCCTACAGTTGTGACGATTGCGAATTCAGATCCAACGACAAACGCAGTTTGGACCGGCACAAACAACTCCACACAGGTGATTTGAAATACTCGTGCACAATCTGCGCATTCAAAACCAACTCCAAGTACCATTTTGGGCACCACAAGAAGTCGCATGAAATCTTACAGAACGCTCCTGATACTGATGAAGAGCTtccaaaagaaaagaaagtcTACGGCTGTGAGGTGTGCGATTATAAGTCCAAAGACCGAGGACACGCCCTCAAACACATCATGCGCCACGCAGGAATTAAACCCTACGCCTGCTCAGTTTGCGACTTCAAATTCCAGGAGAAGTTCTCACTCACGACTCACATGCTGACTCACACCGGAGAGAAACCATTTGAATGTCCTTGTGGATACAGGTGCGCTTTGAAGAAGAACCTCAAATATCACATGAGAACGCACACCGgagAGAAACCGTACACTTGTGATAAGTGCGACTATACGGCGTCAACCAGCTCGGCTTTGAGGACCCACAAAATCGGCCGCCATTCAGAAGTCAAGCCGTACAAGTGTGACCAGTGCGACTACGCGACGGGCTTTTCTTCTGCGCTGAAATCACACCTCGCTTCCCACTCTAGTAGGAATAAGTACAAGTGCGACATCTGCAATTTTGAGTCGAACCGAGCAAATACCATGAAGGTGCACAGGAGGAATCACAAACACAAGGACGTCTTCTCCTGCAACGTCTGCAACTTCAAGTCCAACTTTCAGCCCGAACTTACGAAACACATGCTCGAACACGCTGGTGAGAATAGAATCTGA
- Protein Sequence
- MSEESEVEGEPVGSDLLTLEFVPDFDFEDDPGSDWSPSEDPKPKKRKIAGKMKKKRGPHPKKKSGTEIISYDKNVEFVIIKEEPEDGDSKEPMLECYECGYKCAKRQRQNLVRHMVKHTGEKPFACQYCDFATGYEHALKRHTSQHTGERPYLCNLCDYKTAYPSALRKHLQTHDEVKPYNCDQCAFSTVYVSSIRKHILAKHGPDDEKPFFCDQCDFRTVQRQSLKRHILAKHTDESLRPYKCDYCDYTCVQRSIMKNHMMAKHSGSYLFKCKLCKFETNYMVSLKRHVRSHGIDDKEIGEECESEAVDGSGADHEVFFKGSQIYECEMCEFRTLYPAALKRHSMIHSGEKPYECNICDYKSAYKSALKVHITRHEDFRPFPCDECDYRGRTANHLMNHMRVHTGEKPYSCDDCEFRSNDKRSLDRHKQLHTGDLKYSCTICAFKTNSKYHFGHHKKSHEILQNAPDTDEELPKEKKVYGCEVCDYKSKDRGHALKHIMRHAGIKPYACSVCDFKFQEKFSLTTHMLTHTGEKPFECPCGYRCALKKNLKYHMRTHTGEKPYTCDKCDYTASTSSALRTHKIGRHSEVKPYKCDQCDYATGFSSALKSHLASHSSRNKYKCDICNFESNRANTMKVHRRNHKHKDVFSCNVCNFKSNFQPELTKHMLEHAGENRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -