Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986061.1:16196741-16205970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.026 4.3 9.2 5.4 3 23 64 84 62 84 0.94

2 14 0.005 0.83 11.5 0.5 2 23 109 130 108 130 0.96

3 14 0.015 2.5 10.0 1.5 2 23 268 289 267 289 0.96

4 14 0.029 4.8 9.1 0.3 1 23 311 333 311 333 0.98

5 14 0.00027 0.046 15.4 1.6 1 23 339 361 339 361 0.95

6 14 2.2e-06 0.00037 22.0 3.0 1 23 369 391 369 391 0.97

7 14 0.012 2 10.2 2.1 1 23 397 419 397 419 0.98

8 14 6.1e-05 0.01 17.5 2.6 1 23 425 447 425 447 0.98

9 14 5.3e-07 8.9e-05 24.0 0.3 1 23 453 475 453 475 0.98

10 14 0.0008 0.13 14.0 0.6 1 23 481 503 481 503 0.97

11 14 3.3e-06 0.00056 21.5 2.2 1 23 509 531 509 531 0.97

12 14 0.02 3.4 9.5 2.7 1 23 537 559 537 559 0.98

13 14 8.7e-08 1.5e-05 26.4 3.5 1 23 565 587 565 587 0.98

14 14 3.3e-05 0.0056 18.3 4.8 1 23 593 615 593 615 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.026	4.3	9.2	5.4	3	23	64	84	62	84	0.94
2	14	0.005	0.83	11.5	0.5	2	23	109	130	108	130	0.96
3	14	0.015	2.5	10.0	1.5	2	23	268	289	267	289	0.96
4	14	0.029	4.8	9.1	0.3	1	23	311	333	311	333	0.98
5	14	0.00027	0.046	15.4	1.6	1	23	339	361	339	361	0.95
6	14	2.2e-06	0.00037	22.0	3.0	1	23	369	391	369	391	0.97
7	14	0.012	2	10.2	2.1	1	23	397	419	397	419	0.98
8	14	6.1e-05	0.01	17.5	2.6	1	23	425	447	425	447	0.98
9	14	5.3e-07	8.9e-05	24.0	0.3	1	23	453	475	453	475	0.98
10	14	0.0008	0.13	14.0	0.6	1	23	481	503	481	503	0.97
11	14	3.3e-06	0.00056	21.5	2.2	1	23	509	531	509	531	0.97
12	14	0.02	3.4	9.5	2.7	1	23	537	559	537	559	0.98
13	14	8.7e-08	1.5e-05	26.4	3.5	1	23	565	587	565	587	0.98
14	14	3.3e-05	0.0056	18.3	4.8	1	23	593	615	593	615	0.99

Sequence Information

Coding Sequence: ATGAATTTGAGATCTGGAACTGTAGCTGCTTCACCCGATGAGAAGAATCGAGGATCAGGCGATGAATCCCGGATTGGAGTTATCTCAATCCTGTCCGACTCGGACAACGAAGACTTGAAGTCCGAAGACGACGTCGTCAGCCTCGACGATGACGTCACCGAAAGCGAGAGGACCTTCAAGAGAATCTGCTGCTTGCTGTGCGACTACACTTGCACCAGCTTTCAAACCCTGAGGAAACACATATACACCCATTTGTCCGGGAAAAAATCGAGGAAGCCGCGGGACATGATCAAGGTGGAGTATAATGACAAGTCGAAGTCTCTGATGTGCTCCAAGTGTGGATTCGTTGCGAACAGCCCTTTGAGCTTCAAAAGGCACATCAAGCAGCATAAGAAAGTGACGAGATTCACTCCCTGCACTGATGAACTCAACAAGAATTTCAGGATTGAGATATACCTCGCCATTGTTCCCGAACTGGATTCTACTGTTTCTACAATTTCGCTGTGGAGTCGTCTGGATCATATTTCAGTTGTAGTGAAACCCACGTTGCCGACTCTGGTAAGTTTTACGATTTCGCCAGTTTCGATCACGATTTCTTGTCACAATTACTCCAACTGTCGTTCGTTTGATCCAGGATACGATCATCTCGTCGCAGAAAACAGTTTCGTCCGACAAGACATCGTTAACAACGATCTCTACACATCGACTCAAGTGCCGTCCCGGTGCCAGCTATGCGATTTCGAGGGTTTGGGAGCCCTTCAGATGGTCGACCATATAAAAACTCACCAAGGGGACCAATTGACTTGCAATTTGTGCGGTTATAAGTGCGCCAAATTCGGATACTTGGTGTTGCATACGAGGCTTCACGAAAAGGAGTTGGACAAGGTGATAAGTAATGAATCAAAAACTAATGGGAGCGCGGAGAAGTTGTACGATTGCACTTTATGCGAGTATAAGAGTGCAAAACTGCCAACTTTGATGTCTCATATTTCGACGCATTCCCTGCCACAGTTGTTTGCTTGTAACGTGTGCAGTTCGAGGTTCACTTCGCAGAAGAATTTGAAAGCTCACGTGGCTCATCATAAGAGGACTGAAGAGAAGCCTTTTGCTTGTCCTCATTGTAATCACAAGTACACGCGTGCTGATAATCTGCGTGTGCACATTAGAAATCACACGGGTGTTAAGCCGTACTCTTGCACCAGTTGTGATTTCAAGTGCACGAGAGCTGATATACTGAAGAGTCATATTCGTGGGCATACGGGGGAGAAACCGTACGCTTGTACGAAGTGCTACTACCGGTGCCGGCAGCCAGGGTTGCTCAAAGTCCACATGAGGTCGCACACCGGCGAGCGCCCTTTCGAGTGCAAAGTGTGCGGTAAGAATTTCGGCTTCGCGATGAATTTGAAAGTCCACATGAGGATTCACACGGGTGAAAAGCCATTTGCGTGCACGTCGTGCGAGTACAGGAGCACGACGGCGATGAACCTCCGGACACACATGTCCGTCCACACTGGTCGCAAGCCGTTCGCTTGCACCCAGTGCGAGTATAGTTGCAGTACGGCGGATAACCTCAAGACTCACATGATGACGCACACTGGAGAGAAACCTTATGCCTGCACGGTGTGCGAATTCAAGTCCAGGCGCGCTCAGTGTATCAGGAAGCACATGTTGACTCATACCGGCATCAAACCGTTTCCGTGCGAACTGTGCAATCAGCGCTTTACGACGTCTTCACATCTCAAACGGCATATGATGACTCATACTGGGGAGAAACCCTACACCTGCCACCTCTGCAACTACCGCTGCTCCCAATCCTGGAACCTCAAAGCTCACGTAAACACTCATCTCCAGAGAAGACAAGTTTGCATTATTAAAATCCAATCAACCATGGAGTGA
Protein Sequence: MNLRSGTVAASPDEKNRGSGDESRIGVISILSDSDNEDLKSEDDVVSLDDDVTESERTFKRICCLLCDYTCTSFQTLRKHIYTHLSGKKSRKPRDMIKVEYNDKSKSLMCSKCGFVANSPLSFKRHIKQHKKVTRFTPCTDELNKNFRIEIYLAIVPELDSTVSTISLWSRLDHISVVVKPTLPTLVSFTISPVSITISCHNYSNCRSFDPGYDHLVAENSFVRQDIVNNDLYTSTQVPSRCQLCDFEGLGALQMVDHIKTHQGDQLTCNLCGYKCAKFGYLVLHTRLHEKELDKVISNESKTNGSAEKLYDCTLCEYKSAKLPTLMSHISTHSLPQLFACNVCSSRFTSQKNLKAHVAHHKRTEEKPFACPHCNHKYTRADNLRVHIRNHTGVKPYSCTSCDFKCTRADILKSHIRGHTGEKPYACTKCYYRCRQPGLLKVHMRSHTGERPFECKVCGKNFGFAMNLKVHMRIHTGEKPFACTSCEYRSTTAMNLRTHMSVHTGRKPFACTQCEYSCSTADNLKTHMMTHTGEKPYACTVCEFKSRRAQCIRKHMLTHTGIKPFPCELCNQRFTTSSHLKRHMMTHTGEKPYTCHLCNYRCSQSWNLKAHVNTHLQRRQVCIIKIQSTME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -