Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986049.1:12503173-12509505[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2 1e+03 1.7 2.0 2 23 105 130 104 130 0.71

2 12 6e-06 0.001 20.6 0.8 1 23 165 187 165 187 0.98

3 12 0.0008 0.13 14.0 0.5 1 23 194 216 194 216 0.96

4 12 8.3e-06 0.0014 20.2 0.9 1 23 222 244 222 244 0.98

5 12 2.3e-06 0.00038 22.0 0.6 1 23 251 273 251 273 0.99

6 12 1.4e-05 0.0023 19.5 0.7 1 19 279 297 279 301 0.93

7 12 1.6e-05 0.0026 19.3 0.2 1 23 307 329 307 329 0.98

8 12 3.3e-05 0.0055 18.3 2.0 1 23 335 358 335 358 0.96

9 12 0.00022 0.037 15.7 0.3 1 23 364 387 364 387 0.95

10 12 0.00011 0.018 16.7 1.5 1 23 393 415 393 415 0.99

11 12 7e-05 0.012 17.3 0.4 1 23 421 443 421 443 0.94

12 12 8e-05 0.013 17.1 0.3 1 23 449 473 449 473 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2	1e+03	1.7	2.0	2	23	105	130	104	130	0.71
2	12	6e-06	0.001	20.6	0.8	1	23	165	187	165	187	0.98
3	12	0.0008	0.13	14.0	0.5	1	23	194	216	194	216	0.96
4	12	8.3e-06	0.0014	20.2	0.9	1	23	222	244	222	244	0.98
5	12	2.3e-06	0.00038	22.0	0.6	1	23	251	273	251	273	0.99
6	12	1.4e-05	0.0023	19.5	0.7	1	19	279	297	279	301	0.93
7	12	1.6e-05	0.0026	19.3	0.2	1	23	307	329	307	329	0.98
8	12	3.3e-05	0.0055	18.3	2.0	1	23	335	358	335	358	0.96
9	12	0.00022	0.037	15.7	0.3	1	23	364	387	364	387	0.95
10	12	0.00011	0.018	16.7	1.5	1	23	393	415	393	415	0.99
11	12	7e-05	0.012	17.3	0.4	1	23	421	443	421	443	0.94
12	12	8e-05	0.013	17.1	0.3	1	23	449	473	449	473	0.94

Sequence Information

Coding Sequence: ATGGATGAAATTGTGGTTGTTAGCGATGACGACGAAATTGTTGAAGATGACTACATTGGTGTAGTAATGGATGATGAAAACGACGTAGATTATGTTCCTGGGAACCGCCAGAAAGGCGATGGCCCGCGTAAGGACGCCTCTTCGAAATCGGATGTTACAATCAAAATGGGAGtgattgaagaagaagaggacGAGGAACTGGACGAGTCATCAGGAAAATCCCAGGTTGCCCGTAGGAAACCGATAGGGAGACAAACTGAATCCATGAATATCATCCCACAAATGGTCATTAGCAGATCCAACAAAACCTACACTTGTTTGATATGCTCAGCAGAAGATAAAGTGCAAGGAGATGCAAGAACTCTCACAAACCACATGAAATCCGAGCATAACATTCGGCTCAATATTTGTGAAATGAGCGGCATGGAATTTCTCAAGAGGTCTGAAATGACTGTTCACATTGATGAGCAATTCGCGAATGAAAAAGGCGAATTCAGCTGTGAAACCTGCGGTCGCGTATTTACCAATTTGGGTTTATACCGCGTGCACAAGCGCATGCACTTGCCTCAGCATAAGAATCACATCTGTGAGCAGTGTGGAAAAGCATTTTTGTCAAAAAATATGTTGGACGATCATATGAACATACATACTGGTGCAAGGCCGTACAAGTGTACCAAATGTGGTAAAGAGTTTGCTTCGAAGTACTCGGCCAAAGCCCACGAGAAGATCCACGTGGAGCGGCCAAGACCCTATAAGTGCTCCCAATGCTCCAAAGCTTTCATTACTGAGGCAAACCTCCTGCAACATGAAAGGACTCACAGTGCTACCAAGTCCTTCCCCTGCCAAGTTTGTGGGAAGTCCTTCAGTTCTGCACGAAATTTAGAGGTCCATTGTGTTATACACACTGGTTATAAGCCGTTTGTGTGCCGAGTATGCGACAAAGCTTTTGCCCGTAAAGCCGAAATCCGGGACCATGAGCGAACCCATACTGGAGAGAAACCGTACCATTGCGAATTCTGTGGTGCCACTTTTGGGCAAAGGAGTAACTTGCAGTCCCATAAAAGGGCCACTCATTATGATGACAAGCGATATCAGTGTATCGAGTGTGGCAAAGCGTTCAAGAGGAGGAGACTTCTGGATTATCACATCAAGGCTGCTCATACAGGAGAACGCCCCTATAAATGCCAAATATGTAGCGCCACTTTCATTTACCCCGAGCGCTTCAAGAAACATCGGCGGATTCACACTGGTGAAAAACCTTACCTATGCGAGGTTTGTGGTAAAGCGTTCAACAGCAGGGATAATAGAAATGCTCACAGGTTTGTCCACAGTGACAAAAAACCGTACGAATGCTTCGTCTGTGGGATGGGATTCATGCGGAAGCCTCAGCTCTACAACCATATGCAAACTCAGGGCCATATAAACGACACCATCGTCGTTAATCAACCTCGTCTGACCACAGAAGATGAGCAGATATCACAGGAAACGGACGCTCAAATTGAGATGATCATCACTGATAACCAGGAGAAATGGGCCTCTGAACAAGTTATGGACGAAGCTGGGGAACTGATCGCTGCTCATGATGGTGAAGGTAACACCAAGATGTACATTCGTGAGTTGAAGGAGCACGTCATAATCCAAGGGAAGGAGAAAAACATCGACGAAAGCCAGTACTCTGAGGAAGTTGGTCACCTGATTATTGATGGAcagGTCCAATTTGCTGATGGCGAAACCCTTGAGCTGGATGCTGGTACAACGGTAGGAGAAAGTACCGAAGGCACTCCTGTTGTAGCTCCTGCTGGACACACCGGTGAATTCACTGTGGAAGCTGGCGAAGGTACTACCGTTGATACGCCCAACGGCCCAGTTCGTCTCGTTCACATTTCACTCCCCGAGTCTTCTGACCCCAACAACCAAGGGACTTGGTTCAACATAGTTCAGCAGTAG
Protein Sequence: MDEIVVVSDDDEIVEDDYIGVVMDDENDVDYVPGNRQKGDGPRKDASSKSDVTIKMGVIEEEEDEELDESSGKSQVARRKPIGRQTESMNIIPQMVISRSNKTYTCLICSAEDKVQGDARTLTNHMKSEHNIRLNICEMSGMEFLKRSEMTVHIDEQFANEKGEFSCETCGRVFTNLGLYRVHKRMHLPQHKNHICEQCGKAFLSKNMLDDHMNIHTGARPYKCTKCGKEFASKYSAKAHEKIHVERPRPYKCSQCSKAFITEANLLQHERTHSATKSFPCQVCGKSFSSARNLEVHCVIHTGYKPFVCRVCDKAFARKAEIRDHERTHTGEKPYHCEFCGATFGQRSNLQSHKRATHYDDKRYQCIECGKAFKRRRLLDYHIKAAHTGERPYKCQICSATFIYPERFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECFVCGMGFMRKPQLYNHMQTQGHINDTIVVNQPRLTTEDEQISQETDAQIEMIITDNQEKWASEQVMDEAGELIAAHDGEGNTKMYIRELKEHVIIQGKEKNIDESQYSEEVGHLIIDGQVQFADGETLELDAGTTVGESTEGTPVVAPAGHTGEFTVEAGEGTTVDTPNGPVRLVHISLPESSDPNNQGTWFNIVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145843;
90% Identity: iTF_00145843;
80% Identity: -