Scal009979.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986050.1:8233672-8240750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9 3.1e+02 3.4 0.1 3 23 7 27 6 27 0.94 2 15 0.82 1.4e+02 4.5 0.5 1 20 351 370 351 374 0.78 3 15 0.15 25 6.8 0.2 5 23 395 414 392 414 0.92 4 15 0.00038 0.063 15.0 0.2 2 23 420 442 420 442 0.96 5 15 4.7e-05 0.0079 17.8 0.3 2 23 445 466 444 466 0.96 6 15 2.2e-05 0.0037 18.9 1.4 1 23 472 494 472 494 0.95 7 15 3.1e-06 0.00051 21.6 2.0 2 23 501 523 500 523 0.93 8 15 0.0002 0.033 15.9 0.5 5 23 536 554 535 554 0.97 9 15 0.0045 0.76 11.6 1.9 2 23 560 582 559 582 0.97 10 15 0.0026 0.44 12.3 0.1 2 23 598 618 597 618 0.94 11 15 0.029 4.9 9.0 1.8 5 20 628 643 626 646 0.88 12 15 4.5e-06 0.00076 21.0 0.4 1 23 654 676 654 676 0.98 13 15 1.5e-05 0.0025 19.4 6.3 1 23 682 704 682 704 0.97 14 15 1.1e-07 1.8e-05 26.2 2.8 1 23 710 732 710 732 0.98 15 15 0.0014 0.24 13.2 9.3 1 23 738 760 738 761 0.96
Sequence Information
- Coding Sequence
- ATGGATGGACTAGTAGCCTGTCCAGTATGCACCTTATACTTGAGGGAGGGCATGTCTCTCAACAGTCACTTGGAAACTCATCCGAAAGACCAGGTGATTGAGGCGCTAGTGAGAGCTGTCTCAGATAGAGAACGCGCCGCAGGACTTCACCCTCACTCCGCCATCATCAATCCCTTCCAGGTTGTGTCTGAGGAGCATATCTTCTTCGGACGTCAGCAGGTGACCACCAACATCCTCGCTCCTCTGATGACTTACCCTATTTATCAGCAGCAACAGGTTTTACAAGGGTCTCAGCATCATGAGACGTTCATTCAGCCGCAGCAACCGCAGCTGCAGCAACACCCTCATCAAGATGAACATAGTGAAACTAGGAGGCACTCCGACGTACCATCATCTGCCGCGGCCGTCACTTCTTCTGGCAATGAAGTGATAACCACCCTAATCAACGTACAGCAAGAGTTTAGGCCAGGCCCAGAAACGATGCCTCTCCCATTGGTTGAAGTCGAGGAGAAATGTGATTATGAGGAAAAGGTTGATACTGATGCCCCGATGGTGATTCACCtttctgaagatgaagagagCCACAGCCATGTTGAAAAGCCGGCTGAGGAGGACTCACAGAGGTATATAATACCCACACCCACCAGTGTAATCCACACACCAATAGACCCCACCCAGACCGTCATCGCTTTGACTAATGTCGAGCGGGACTCGAGCCAAGACCAATTCATTACATCCGACTTTCAAAATGAAGATGCCAGGCATAGCGAAGACTTCATCGACGACTCCAATCACGCTTCCGAGTACGAGGACGATGACGATGTTCACCACATGGTTGAGCACGAGCGTCGCATGTATCTCGAAGAGCAGGAAGACGACGTAGAGGCTCGGAGCGACTCAGGTCTTCAGAACATCCAAGCGGACGAGTGTATGCCGGCTAGAGGAGAGCTCTCTGGCCACGGCAGCGTCAATACTGTTCATTCCTGGGATCATGATGATATCGGGATGCCAGCTCCTATTTGGGAAGGGAAGACTGAGTCGTTAAAGCGCTACACTTGTCTGTATTGCGATGAGGAGTTCCCTTGCCCCAAAGAGAGGCGCGTTCACGTAGCTGCAGTCCATTGTGCTGCCACGGATACCAAAACCGATACCCTCAAGAGTCAGAGGGCCATCATGTGCATCAAATGCGGCCTACAGTTGGAAACATATAAAGAtctcaaaGTTCATATCAAAATGGAGCATAAAAAAGTGACGAGGCAGTGCAGCGTGTGTCAAGAGGAGTTCAAATCCCAGGATGAGTACATGGAGCACATCATCAAAGTGCATCCGCTCGAATGCAGGACGTGTGGAAAGACTTTCAAAAGCAAGGCGAGCCTCGTCGGCCACGCCAAGATCCACTTGGTCGTCAAACCCCACGCCTGTACCCTCTGCCCCAAGACTTTCATCACCAACCAGAAGTTGAAAGAACACATGAATGGGCACACGGGATACGCCCCAATCCAGTGCAATATGTGTGACAAGAAGTTCAAGAGGTATTCAAATTTGAAGCAGCACAAGGACAGTGTTCATTTCCAGTTGAAGAAGCAGGCGAAGGAATTTTTCTGCGAATGCGGAGAAACGTTTTCATCAAAGAAGAAATTGGAGTGGCATCAGGAAACCCACGATGAGAAACCGAAGCAGTGTATGTACTGCAGTGACCGGTACATCCACAGTGCGAGTCTCACCCGTCACATAAGGAAAGCTCATAACAATGAGTACTTACCAGCTGGTGGGGTCAAGAAAAAGAACGTCGTGTGCCCTATTTGTAATATGACATTCGTAGACACTTCGCTCAGGGCGCACATGAAACAGCACGGTACTGTCAAACAGTTCGGGTGTATTGTATGCGGTAAGAAGTTCTATACCAAGTGGAACCTTCACCTGCACCGATGGACTCACGCATCCCGTATGTCCAAACCGTACAAATGTACTCTCTGCAAGAGCGGTTTTGTACGTCAGAGCGATCTCCAAGCTCATATCCGAGCTCATTTCAACAGCAAGCCCTTTACTTGTAACCATTGTGGTATGCAGTTCAATAGGAAACACAACTTGACCCGTCACGAGAAAGAACATCTGACTGAGAAGAAATTTGTTTGCAATGAGTGCGGTAAAACCTTCCACCGGCAATATTATCTAGTCGAGCATATGAGGACCCATACCGGAGccaaaccattctcttgtcacaTTTGCAACAAAACCTCGTCCACCAAGTCCAATCAtaataaacacatcaagactcACCACGCTCGGGAAGCCGTGAACACAGAGTCCTAA
- Protein Sequence
- MDGLVACPVCTLYLREGMSLNSHLETHPKDQVIEALVRAVSDRERAAGLHPHSAIINPFQVVSEEHIFFGRQQVTTNILAPLMTYPIYQQQQVLQGSQHHETFIQPQQPQLQQHPHQDEHSETRRHSDVPSSAAAVTSSGNEVITTLINVQQEFRPGPETMPLPLVEVEEKCDYEEKVDTDAPMVIHLSEDEESHSHVEKPAEEDSQRYIIPTPTSVIHTPIDPTQTVIALTNVERDSSQDQFITSDFQNEDARHSEDFIDDSNHASEYEDDDDVHHMVEHERRMYLEEQEDDVEARSDSGLQNIQADECMPARGELSGHGSVNTVHSWDHDDIGMPAPIWEGKTESLKRYTCLYCDEEFPCPKERRVHVAAVHCAATDTKTDTLKSQRAIMCIKCGLQLETYKDLKVHIKMEHKKVTRQCSVCQEEFKSQDEYMEHIIKVHPLECRTCGKTFKSKASLVGHAKIHLVVKPHACTLCPKTFITNQKLKEHMNGHTGYAPIQCNMCDKKFKRYSNLKQHKDSVHFQLKKQAKEFFCECGETFSSKKKLEWHQETHDEKPKQCMYCSDRYIHSASLTRHIRKAHNNEYLPAGGVKKKNVVCPICNMTFVDTSLRAHMKQHGTVKQFGCIVCGKKFYTKWNLHLHRWTHASRMSKPYKCTLCKSGFVRQSDLQAHIRAHFNSKPFTCNHCGMQFNRKHNLTRHEKEHLTEKKFVCNECGKTFHRQYYLVEHMRTHTGAKPFSCHICNKTSSTKSNHNKHIKTHHAREAVNTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930618;
- 90% Identity
- -
- 80% Identity
- -