Scal007914.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodema calcarata
Gene Symbol
-
Assembly
GCA_963920205.1
Location
OY986049.1:23622249-23631749[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.5 9.2e+02 1.9 0.7 1 23 252 274 252 275 0.94
2 12 0.00015 0.024 16.3 0.3 2 19 281 298 280 301 0.95
3 12 5.9e-06 0.00099 20.7 0.4 2 23 340 362 339 362 0.95
4 12 0.0041 0.69 11.7 0.4 1 23 369 392 369 392 0.97
5 12 8.1e-05 0.014 17.1 4.9 1 23 398 420 398 420 0.97
6 12 1.3e-06 0.00023 22.7 0.4 2 23 442 463 441 463 0.96
7 12 9.5e-06 0.0016 20.0 0.5 1 23 469 491 469 491 0.98
8 12 1.7e-06 0.00028 22.4 2.5 1 23 497 519 497 519 0.99
9 12 2.6e-05 0.0043 18.7 0.9 1 23 525 547 525 547 0.99
10 12 1.4e-05 0.0023 19.5 1.5 1 23 553 575 553 575 0.98
11 12 2.5e-05 0.0042 18.7 0.7 1 23 581 603 581 603 0.99
12 12 1.6e-07 2.7e-05 25.6 2.3 1 23 609 631 609 631 0.98

Sequence Information

Coding Sequence
ATGACTTTAAATGTTTACAATTCTACTTTATGTCGGCTCTGTGCCGAACCGTACACCAGTGGAATAAGTTTGAGTGCCGTGAATGAAGAAGGGATATCGAACTATGATCTGATCAACAAATACTTGCCTTTGAAAGTCGAAGACAATGGTAAATTACCGCAGACTATGTGTAACGGATGCCACAATCATCTGCGGAACACTGTAATTTTCTTTGGACTCCTCATCAAAGGACAGGCTCTTCTGCAGAAGTTGTGTAAACATATTGTGTCTAAGGAACACTCTGGAGGTGATGTGGACAAAAATTTCTATGATGACAGTCACAGTATCCGAGCTCAAATTGATGTCGCCGATGTTCAACTCCCTAGAAGAAAGCGTGGGCGCCCTCGCAAAGACGAAGTGAAGGTCCTCACGAACACTTCCGGACCTGAAGGTACGCCACAGGTTGACGCACTTTCTGTAGCTCAACAACCTCTTCAACCCATAGAAGAGAGAGATGAGGAACAATCGCCTCCCGATGGCAAGCGCAGGCGGAAGAAACCAGTCAGATATTTGGAGGCCATTCAAGGAAAAGAGTTGGAAAGAGTTTTCCATGAAAATGGTGTGACTGATGATGGACTACCATCTAAAGAATGCGAAGCCGGAGAAGgTGAAAGAGAAGTTATTGGACGTGTTCAGAATCTTAAAGGAGAATCAATAGGAGAAGTAATGATGTACAAAAGAATGGTTGACTCCCAGATGAAGAAAAAGTTCCACTTTCGATGTGTTGCCTGTAATTCTGTTCTCTCTCAGGAAACCAAATTTGTGGAGCACGTTGCACGTCACCACGTAAACGTTGAGTTGAAATGCACCCAGTGCGATGAGGTGTTCGAATCTTCTGATGACTTGAAGCGCCATAGCTTCGAGACAGGGCACGAAACCTCTAATCGACTCCAGCCATTAGATGGCGAACCAGACGACAACGACCCTGGTGGGCAACCCTGCACTGCAGGACAAGAGTTAACCGAAAAAGTTAAATCTACTTGTCCCATATGTCAAAAAACATTCATGTTTGCCTCAGACTTGAAGAGTCACATGAAAGCTGAACATGACGATGTTGCTGGAGTTTACCCTTGCGAtatttgtggtaaaaagttgaAGTACATGTCGTCAGTCGTGTACCATAAACAAACGGAACATGTTATTGGGACGAAGTTTGTATGCAGCAAATGCAACATGACGTTCAAACACAGGCGATTACTTCAAAAGCACCAGTACGTCCATATGGAAAATGGCAAGGTTGACCGACAAGGGAATCCCATCCAAAACGAACGCAGGCAGGGTTTGAACTGTCCGGATTGtggaaaatatttcaagtcCAAAGCATATTTGAAGATCCACGTACGACTCCATGATGATAACAAAAATTATGTTTGTGAAATCTGCAACACATCTTTCCAACAAAGATCTGCTCTCATGCTACACAGAAGATTGCATTCAGAAGAAAAGCCGTTCCAATGTTACTTCTGTAACAAGATGTTTTTCCAGAAGGGTAACCTCAACGAACACATGAGAATACATACAGGAGAGAAACCTTTTCAGTGTGGGATATGCAACCGGATATTTGCTACTTCTTCCCAGAGACGCATTCATCTCAAGAGACATATAgGAGAAAAACCGTTTGTATGCGAAATTTGTCAAAAGGCGTTCCTCCACAAAGACTCCCTGATATCTCATATGAGGCGGCACACTGGGGAACGACCCTACCAGTgtgaaaagtgtaaaaaaacCTTCACCGAGTTGGCAGCCATTAGAAAACACGTAAGAATTCACACTGGGGAGAAGCCGTTTGTTTGCAACGTGTGTGATAAGGCGTTTGCAGACAGCTCTAACCTTTGTAAACACAAAAAGACACATTCCAAGGCGAGATCCGACACGAGTTTACTTGTTTCGGATATTCTTCCCGATGGGCTCACAGTCAATGACCTCGCACTAGTTGACAGCTCTGATGAGAAACAGTTCTGGGCTGTCGTCAAGCAGACATCAGAATCTCAAGACGATAGGGATCCTGACCAACAACAAGTCATTTACATAACATATAACGACCCAGAAGTCCCCGATTCGAAGGTGAGTGAAGCATTGATAGTGAACAACAAGGAAGCTGTTGGGGACAAGGTAGATGACATCATAGTAGAAGAGCCACAAGAAGAAATCATAGCAAACGAGAGGTTGATCGCTGCCGCAAATAGCATTAACACAAATAATAGTCCCAGTCTTTCACCAACGTCTTCCCACCAGGGGTTACAAATGACTCCTCTCGAGGGTCAAGTAGTGATGGATGAGCATGGAAACCCTCTTAGATTTACTAGTGCTGATGGAGGAATTTTCCAGGTCACTACTATTGATGGAGAATCACTTCAACTTACTGGGAGTGATGGCACCTCCATGCCTGTACGAATAACCACTGCGGATGGCGAGACCCTTACTCCTGCTGGCCTCAATATTTCCTCAATGGTTGCGGATGTTGTAGAGGACTCTTTGGTATCGGGAACTGTCGAATCATTGGAGCTTGTTGGGACAGCTGATGTGCGGTTGCTCTCTGAAGCCGCTCTGAACTTCCTACCTCTCTCATAG
Protein Sequence
MTLNVYNSTLCRLCAEPYTSGISLSAVNEEGISNYDLINKYLPLKVEDNGKLPQTMCNGCHNHLRNTVIFFGLLIKGQALLQKLCKHIVSKEHSGGDVDKNFYDDSHSIRAQIDVADVQLPRRKRGRPRKDEVKVLTNTSGPEGTPQVDALSVAQQPLQPIEERDEEQSPPDGKRRRKKPVRYLEAIQGKELERVFHENGVTDDGLPSKECEAGEGEREVIGRVQNLKGESIGEVMMYKRMVDSQMKKKFHFRCVACNSVLSQETKFVEHVARHHVNVELKCTQCDEVFESSDDLKRHSFETGHETSNRLQPLDGEPDDNDPGGQPCTAGQELTEKVKSTCPICQKTFMFASDLKSHMKAEHDDVAGVYPCDICGKKLKYMSSVVYHKQTEHVIGTKFVCSKCNMTFKHRRLLQKHQYVHMENGKVDRQGNPIQNERRQGLNCPDCGKYFKSKAYLKIHVRLHDDNKNYVCEICNTSFQQRSALMLHRRLHSEEKPFQCYFCNKMFFQKGNLNEHMRIHTGEKPFQCGICNRIFATSSQRRIHLKRHIGEKPFVCEICQKAFLHKDSLISHMRRHTGERPYQCEKCKKTFTELAAIRKHVRIHTGEKPFVCNVCDKAFADSSNLCKHKKTHSKARSDTSLLVSDILPDGLTVNDLALVDSSDEKQFWAVVKQTSESQDDRDPDQQQVIYITYNDPEVPDSKVSEALIVNNKEAVGDKVDDIIVEEPQEEIIANERLIAAANSINTNNSPSLSPTSSHQGLQMTPLEGQVVMDEHGNPLRFTSADGGIFQVTTIDGESLQLTGSDGTSMPVRITTADGETLTPAGLNISSMVADVVEDSLVSGTVESLELVGTADVRLLSEAALNFLPLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-