Basic Information

Insect: Stenodema calcarata
Gene Symbol: -
Assembly: GCA_963920205.1
Location: OY986051.1:33978504-33982945[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3e-07 0.00018 22.4 0.0 5 43 302 339 300 341 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3e-07	0.00018	22.4	0.0	5	43	302	339	300	341	0.88

Sequence Information

Coding Sequence: ATGCCATTTTTTCGGGAGCAAATGGGGAGGAATCGGTGGATTTTGATCAAAGATTGTTTGCATTTTGCTCCTAGTGGTCCTTCAACTGATCCAATTCATAAAGTCCGTCCTCTTGTCACTCATTTTCATGATCGTTTAGAAGAGATAATAAACCCGGCCAAAAACGTCTGTATTGATGAGTCAATGGCTCCGTGGAGGGGGCGTTATTTCATTTCGCCCCTAAAACGCCATAAGTATGGTTTCAAATTCTACATGTTAACCGAACCCGATGGGCTTATTCACAGATTTTTGATTTATGCGGGCGCTGCTGATGAGGAAGTATCTGGCGAGGGTCATGCAAACAAAGTGGTATATAAACTGATGACCAACCTATTGGGGGAAGGACGTTCCATCTATATGGATAATTTCTACAACAGTGTAGATTTAGCCGCCTCACTTTTAGATGAAGACACTTATGTCACTGGGACCTTGCGGTCAAACCGCAAACATGTTCCCAAGGACTTAGTGTCTTGTAAGCTGAAGAAAGGTGAGTCAGCCCAGCGTTGGTCCCCTGAAGGGATAAATGTGACAAAGTGGAAAGATAAGAGGGACGTGTGGACCATATCCACGGAATTTTCTGGGGATATGGTCACAGTTTCCGCACGTCGAGGATCGTCAAATAAACCTGCAGTTGTGGTGGAATACAACAAGCGAATGGGAGGTGTTGATGTCGTTGATCAACATCTTGCTTACTACACTGCACCACGACGGAGCATCAAATGGTATAAAAAATTAGGGCTGCACATTATGGAACTTATGCTTGTGGAAACCTTTTTCTTGTACCGTCGCTATTCTGTGCATTGTAAAAAACTGGAGCTAACTTCCTCCATGACGAGGCCGTATGGGAATTTCTCCTTGAAGGACCTTCAGAGAACTGCGGATGCGGTGAGAAGAGGGAAAAGTCTTCGGGATGCTGCTGGAACTTATCATGTGCCAAAGTCCACCATCCAACGTTACCTGAAAGGGCAGCATCAGTCATCGCCAGGTAGGCCTACAGTCTTCACTGCAGAAGAAGAAGGTCTGGTGGTACGGTGTTTGGGGTTGGCCGCAGAATGGGGCTTTCCCTTAACCAAACGAGATGTGAAGCTGGTCGTCAAACGTTTTCTTGATTCAAAAGGTATAGAAGAGCCTCGTTTTCAAAATAACATCCCTGGAAGGTCATGGATGAAAGCTTTCTTGGACCGACAATCTGAATCCCTAAAACTTCGTCTAAGCCACAACATAAAACGTAACAGGGCAGCTGTCACACCTGCTGTGGTCAAAGCATATTTTGCTGAACTAGAAGCCTCTTTGAGAGGCATTCCCTCTGAGGCAATAATCAACTACGACGAGACGAGCATGCAGGATGATCCAGGATTGGAAAAGATTATAGTCCGTCGTAAGTGCAAGAATCCAGACCGAATATTAGACTCGTCTAAAACCAACATCAGCGTGATGTTTGCTGGTGCAGCCGATGGGACCTGCCTCTCGCCGTATGTTGTTTACAAATCGCTAAGAGTGCACAGTTCTTGGGTAGTTGGAGGCCCACCAAACACAAGGTACAACCACTCAAAATCAGGTtggtttgagtcgacaattttcGAAGATTGGTTCGTGTCAGTAGCCTTGCCTTATTTCCGGGGGCTGAGAAATGACTGCAAGAGAGCCATAATTGGCGACAACCTCGCTAGTCACATTTCCGTGAGGGTCCTGAAGCTCTGCatggaaaataatattgaattcaTATTGCTGCCACCCAACAGTACACACCTGTGCCAACCACTTGATCTTGCTTTTTTCAGCCCTTTAAAAACAGCATGGAGACAAGTTCTTCTCcaatggaaaacaaaaaataggGGCCCACTGCGAAAAGATTATTTTCCACCACTTCTGAAGAAAACAATGAATGCAATGGGAGACAGAACTTCAGAAAACATCAGAGCTGGCTTTGCCGCCAGCGGAATATTTCCCATCGATCaacaaaaagttttaaaacatcTCCCCAAGCCACGTGAACCTGTGGACGTTTTACAACAAGGGGCCGAGTGGGCTTCAGCATTTGAGGGCTTCCTAAAGGATTCAAGGGAACGAGAAACTACCACAAACCCAAGGAGGAAGAAACTAAATGTCACCCCCGGGAAAAGTGTGGCATGCGAAGAAATATTGGATCAGCTGCAGAATGGTGCCGCTCAAAACAAAAAGGGGAGCAAGAAAAGGGGGAAGCAGAGTGAAGAAGATAGGCAAGATCATGATGACACCGAAGAGGAGCTGCTgccaccaccaccacccaaGAGAAATGTGAAGCTGCGTCGAAGAGTGAGTGAAAGTGAATCATCTGAAGAGGAGGTAGCCATTCCACTGGATGACGAGTCTTCTGATCCAGACGAGATGAGCGACGATCCAGACCAACAAATTGGAATGCCAAATCCCTGCCAAGCTTTTCCAACGTTTGAAGAACCTTCAACAAGTGGAACATCTTTGCTTAATAGGCCAGCGCCCGGTGACTTTGTGGTCGTCCATTACTTATATGATGCTGGCATTAGGCGAGAGAACGTTAAAAATCACATCGGTCTAGTCAAAAATTCTAGCCATGATGGCGAAGTCTTCACCATCCAGTTCTTAAAAAGAAAGACCGCTCGGGACGGAGGAgagattttcatttttccagACGTTGATGACGTCGACGAAGTTGCTTTAACTGAAATAAAGAGAATTGTCAAACCAGTGAGCACCAAACGAGGTCACTATACTTTCATGATGTGA
Protein Sequence: MPFFREQMGRNRWILIKDCLHFAPSGPSTDPIHKVRPLVTHFHDRLEEIINPAKNVCIDESMAPWRGRYFISPLKRHKYGFKFYMLTEPDGLIHRFLIYAGAADEEVSGEGHANKVVYKLMTNLLGEGRSIYMDNFYNSVDLAASLLDEDTYVTGTLRSNRKHVPKDLVSCKLKKGESAQRWSPEGINVTKWKDKRDVWTISTEFSGDMVTVSARRGSSNKPAVVVEYNKRMGGVDVVDQHLAYYTAPRRSIKWYKKLGLHIMELMLVETFFLYRRYSVHCKKLELTSSMTRPYGNFSLKDLQRTADAVRRGKSLRDAAGTYHVPKSTIQRYLKGQHQSSPGRPTVFTAEEEGLVVRCLGLAAEWGFPLTKRDVKLVVKRFLDSKGIEEPRFQNNIPGRSWMKAFLDRQSESLKLRLSHNIKRNRAAVTPAVVKAYFAELEASLRGIPSEAIINYDETSMQDDPGLEKIIVRRKCKNPDRILDSSKTNISVMFAGAADGTCLSPYVVYKSLRVHSSWVVGGPPNTRYNHSKSGWFESTIFEDWFVSVALPYFRGLRNDCKRAIIGDNLASHISVRVLKLCMENNIEFILLPPNSTHLCQPLDLAFFSPLKTAWRQVLLQWKTKNRGPLRKDYFPPLLKKTMNAMGDRTSENIRAGFAASGIFPIDQQKVLKHLPKPREPVDVLQQGAEWASAFEGFLKDSRERETTTNPRRKKLNVTPGKSVACEEILDQLQNGAAQNKKGSKKRGKQSEEDRQDHDDTEEELLPPPPPKRNVKLRRRVSESESSEEEVAIPLDDESSDPDEMSDDPDQQIGMPNPCQAFPTFEEPSTSGTSLLNRPAPGDFVVVHYLYDAGIRRENVKNHIGLVKNSSHDGEVFTIQFLKRKTARDGGEIFIFPDVDDVDEVALTEIKRIVKPVSTKRGHYTFMM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -