Scal010611.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986050.1:19281435-19283393[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-08 4.1e-05 24.4 0.0 17 36 1 20 1 27 0.88
Sequence Information
- Coding Sequence
- ATGAGTTTGAGGAAGGCGGCAAAGATTTTTGGAGTCCCCAAATCGACCTTATTTTTTCGTAAGAGCCCCCATTTTACTAAAACCACGTTTGGGCCCCCTCCTGTCCTTACAAAGGAGGAAGAAGACAGTCTATGCCACTGGATTTTCGAATGTGCCAGGAAGGGATTTCCGCGTAGGTCGTTAGACCTAATGAAGAGTGTCGAAACTTTTCTGACCGAAAATCCTCGTCCAACCCctttcataaataataaaccaggtAAATCATGGTTAGCTGGTTTTCTGAAGAGACACCCAGAGATCAGCGAAAGAACGAGTGAAGCCGTCACGTCTGCGAGTGCTGCAGTTGCCAaagaaaatgtcatcaaatGGTTCTCCTCTGTCGAAGAACTTCTCACAGAAGAAAATGCTGTCCACATTTTGAGCGAACCTTCCCGCATTTTCAATGGTGACGAGACAAATTTTTTGCTCTGGCCTAAACAAAGAAAAGTTTTCGCGAAAAAAGGCGCAAGAAACGTCTATGAAGTTGATGGAGGGCTGGCGAAGAGCTCATTGACTGTAATGCTCAGTTTTTCAGCCACAGGAGATATTGTACCACCCATGATAATCTACCCATACGTCAGACTGCCTCGAGAGATAGCATTTTCTGTGCCAGATGGATGGAGTATTGGAACAAGTGAAACGGGTTGGATGAACTCAGCTGTGTTCTACGAGTACATTGCCAACACCTTCGATGATTTCCTGAAGAAAAACAATGTTGAAAGGCCGGTGATCCTCTTTGTTGATGGCCACCGAAGCCACCTAAATTACCAATTGAGAGAGCTTTGCAGCCAACTCAAAATTATACTGGTGTGCTTGTATCCGAATGCGACGAGGATTTTACAGCCGGCAGATGTGGCTGCATTCAAGCCATTAAAAGAGGGCTGGAAAAAAGATTTTAAAAAGATCTCTAAAAAAGATTTTGCACCACTATTAAAAGTCACGGTCGATCAGCATTTGAAACGAACCACGTTGGTGAACGGCTTTAGAGCATCAGGGCTGTACCCGTGGAACTACGAGAGCATCGATTTCTCTAAATGCTTAGGTGCAAACTCTACAACAGTGACCAACGTTGAAGACTCTTCGTCCAAGAAAATTCACCCTCACCTGACTTATGAAGAATTTAAAAACTTCCTTGGGCCGCGGTTGCTGAGGACCATTGATGAACAAGGCTTTGAAAAAGATGATGAGGATTTCAACTGTGCACTGCAAGAAGCAATTCTGCGCATGAACGAGCACTTCAAGTCAGCTGCCCCACTCATGACTAGAGAGGAAGTCACCACTGATGGTTCACAGCTTAATCAGCTCGTTTTTGACGCCACTATTAATCATGAAGAATTTAATGATGGTATCGATTCAGGAACTCCTCCTCATTCCCAAAATATTGCCCAACCAAATTTTTCTCTTGATGTACGTGTCAATGAAGAACCAAAAAGTGACCTCATGCCTAACGTCAGGACATTGGCTGTCAATTCAATAGACTCCTGTCTAATTTATCCAGACACACCCAAAAGGAAAGGTGTTCGAAACACCAAAAGAGTACCTTTTGTGCTGACATCTTCTGCGTGGAAGAGAACATTTCTGGAAGACGAAGAAAGGAAAACTCAAGTTCAAAGGGAGAAGGAACTCAGAGCAGAGCAGAAGAAGATGGCAAAAGAacagaagacaaaaaatccaaaGAAGAGGGGGCAAAAGAGGAAAACTTCATCGTCAAACCACGACTCCACCTCCACTTTCGTTCAGGAATCTCGTCCGTCAGATGAACGATCGACCGTCCCCGAAGTCAGACGTCACATCACATTCTTGAGTTCAGAAGACGAGGACGACGACCATCAGTTTGCCATACCAACATCACCAGCAAGAGCATTTGAATGTGAAGAGGAGGATGGCAATTGGTCAAAGCAACCCCGGGAAACGCTGTGA
- Protein Sequence
- MSLRKAAKIFGVPKSTLFFRKSPHFTKTTFGPPPVLTKEEEDSLCHWIFECARKGFPRRSLDLMKSVETFLTENPRPTPFINNKPGKSWLAGFLKRHPEISERTSEAVTSASAAVAKENVIKWFSSVEELLTEENAVHILSEPSRIFNGDETNFLLWPKQRKVFAKKGARNVYEVDGGLAKSSLTVMLSFSATGDIVPPMIIYPYVRLPREIAFSVPDGWSIGTSETGWMNSAVFYEYIANTFDDFLKKNNVERPVILFVDGHRSHLNYQLRELCSQLKIILVCLYPNATRILQPADVAAFKPLKEGWKKDFKKISKKDFAPLLKVTVDQHLKRTTLVNGFRASGLYPWNYESIDFSKCLGANSTTVTNVEDSSSKKIHPHLTYEEFKNFLGPRLLRTIDEQGFEKDDEDFNCALQEAILRMNEHFKSAAPLMTREEVTTDGSQLNQLVFDATINHEEFNDGIDSGTPPHSQNIAQPNFSLDVRVNEEPKSDLMPNVRTLAVNSIDSCLIYPDTPKRKGVRNTKRVPFVLTSSAWKRTFLEDEERKTQVQREKELRAEQKKMAKEQKTKNPKKRGQKRKTSSSNHDSTSTFVQESRPSDERSTVPEVRRHITFLSSEDEDDDHQFAIPTSPARAFECEEEDGNWSKQPRETL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365369; iTF_00883948;
- 90% Identity
- iTF_01365369; iTF_00883948;
- 80% Identity
- iTF_01365369;