Scal010246.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986050.1:12585061-12585432[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-09 2e-06 28.7 0.0 1 38 8 45 8 51 0.92
Sequence Information
- Coding Sequence
- ATGCCGAAGCCCCCCCAATACTCTGAAGAGGCTTTGTTGAAGGCAATGGAAGCGTTCAAAGAAGGCAAAGTTTCTCTGCGTGCTGCGGAAAAGGCGTATGGCGTTCCCAGGCCTACACTCTCGTGCCATTTGAAATATCCACCTGCTAAAAGGACTTTTGGCCCTTCACCTATCTTATCAGTAGAAGATAACCACTGCTATAAAGAAGCAGGGAGTGACGAAGACAATTATAGTTTGGACATTTCGTCTGAGAGTGACACAAGTTGTGACATGATGTCAATGGAAGACATTTTGAATGCCTGTTCTTCCAAAATGAAAAGTGCAATAGGGGAAGCTGAAGTTTTATGTTTTAGATTGAaattttgtgaataa
- Protein Sequence
- MPKPPQYSEEALLKAMEAFKEGKVSLRAAEKAYGVPRPTLSCHLKYPPAKRTFGPSPILSVEDNHCYKEAGSDEDNYSLDISSESDTSCDMMSMEDILNACSSKMKSAIGEAEVLCFRLKFCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365360; iTF_01365361; iTF_01365363; iTF_01365364;
- 90% Identity
- iTF_01365360; iTF_01365361; iTF_01365363; iTF_01365364;
- 80% Identity
- iTF_01365360; iTF_01365361; iTF_01365363; iTF_01365364;