Scal014298.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986051.1:34569356-34573249[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 2e+03 -0.2 0.0 17 26 205 214 201 217 0.86 2 2 1.8e-08 1e-05 26.3 0.0 2 37 231 265 230 272 0.92
Sequence Information
- Coding Sequence
- ATGTCCAGAATACGGTACATCACTatgAGCGACTTTTTTCATCCCATTAAACAATTTCCAAATAGTGGCATCAGGTTGGCAGTCAACGGGCGAAGCATCGAGCAGGTGGCACGATTCAAGTACTTGGGGCAATGGGTGACGGAGACGTGGTCGTTGGAGGGGGAGTTGCGCGGCCGAATCGAAATAGCACGTGGGGCGTTCAACAACATGTGTAGTATATTGTGTCGCCGGGATGTAAGTTTCGCGTTGCGCTGGCGAGTTGTTAAGTGCTACGTGTGGTCTGTACTTCTGTATGGTGTAGAGACGTGGACATTGAAGGCCAGGGACATGAATCGGCTGGAGGCTTTTGAAATGTGGCTGATTCGGCGTATGCTGAGAATCCCCTGGACCGCAAGACTCCGAAATGACTACATCCTCCAACAGAACTCCCTGAAACGTGAACTGCTGATGACCGTAAAGAGGCGCAAAGTGTCGCACTTGGGGCATGTCTTGCGTGGGCCCAAGTACAGTTTTTTGCAGACAATAATGATGGGAAAGATCAGTGGACGTAGGGGAGTGGGACGGAAGCGCGCGGGGAAGCGCGCGTCATGGTTGTCGAACATACGTAGCTGGACGGGAATTAACAGAGCAGCCGATTTGTTTCACCTGGCTCAGGACCGTATGGCGCCTTGCAAGAGAGGGCTGCGGCCAGAGGAACAGCTCCAAAACGCTATCCAAGCAATCAAAGATGGTACGGCCACTAACACTGCTGCTAAAACGTTCGAAATACCTCGTCGAACTTTGAGGAACCACCTGGTTACAGGCAACCTCGTGAAGAAGATAGGACACCCATCCTATATCAGCACAGAACAAGAAGACTTCGCCTCACCAGTGACCGGAATTGAGATCCGATTTGGGAAATTGCTGATCAGCGACCTTTGGCTGCAGAAAAAACAGACCGGGTTAAGAGCCAAACCCGCCTCGCATCATCCCGAACCTGGACGACGAATTAGCGACGTTCAATCAAGAAGACGAGGCAACACTCCGAGAGTGTTGTGCGCTCTGGTGAGGAACCAGAGAGAGCTCAAAAAAATAGATTCATTCCCTCCCTGA
- Protein Sequence
- MSRIRYITMSDFFHPIKQFPNSGIRLAVNGRSIEQVARFKYLGQWVTETWSLEGELRGRIEIARGAFNNMCSILCRRDVSFALRWRVVKCYVWSVLLYGVETWTLKARDMNRLEAFEMWLIRRMLRIPWTARLRNDYILQQNSLKRELLMTVKRRKVSHLGHVLRGPKYSFLQTIMMGKISGRRGVGRKRAGKRASWLSNIRSWTGINRAADLFHLAQDRMAPCKRGLRPEEQLQNAIQAIKDGTATNTAAKTFEIPRRTLRNHLVTGNLVKKIGHPSYISTEQEDFASPVTGIEIRFGKLLISDLWLQKKQTGLRAKPASHHPEPGRRISDVQSRRRGNTPRVLCALVRNQRELKKIDSFPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -