Scal004199.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- bab1
- Assembly
- GCA_963920205.1
- Location
- OY986048.1:42428296-42435445[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-11 2.2e-08 34.9 0.1 3 45 361 404 359 404 0.90
Sequence Information
- Coding Sequence
- ATGGCCAACCAACAGCAGTACTGCTTGAGGTGGAACAACCATAGATCAAACTTACTCACTGTCTTCGACCAACTCTTGCAAAATGAGGCCTTCACCGACGTAACTCTGGCATGCGAGGGCGGGACGTCTGTCAAGTGTCATAAAATGGTGTTAGCAGCTTGTTCTTCGTACTTCCAAGGCTTATTTACAGAGCTACCCTGCAGACATCCCGTAGTTGTGCTGAAGGATGTCCGATACGACGAAATGAAAGCTATATTGGAATATATGTATCGAGGAGAGGTTAATGTAGCACAAAACCAACTTGCTGCACTATTGAAAGTAGCAGAAGCTTTGAAAGTCAAAGGTTTGGTAGAAGAAAACGGCAGCGCATCCCAACCAAAAAGAACTGAAGAGGAAGGGAATGCCATAACAACCTCGACGCCAGCTCAAGCCCCTCCCAGCAGCAGCGTCAGTAGCGAAGAATGTCCTCCCCATTCCACAGGAGTGCATGGAGGTTCTTATTTCTCAAAAATACCTTATAGTTTGTATGGGAAATCCGGAGACAGAAATAGATTGAATTCCACACCACCCACCTGGCCAGTCCCCAGCATCTCAGGGCCAGACAACCCTCCGTCCAGTACTGCCCATACGCCAACTGGATCTGGAACCATCAATAGGTGCTATGACTCAGCCCCATCAGACATGCCCCCACTTCGACGGAAAAAATTCACTAACATCATGATGAGCAAGGAAACGCCCATACTGCGCTCTGTTCTCGGCCAAGGACAAGCAGACTCGTCCCAACCTGTTTCTCTTGTATGCAGACCAGACAGCTTCGAACAAGGAAATCACTCACCTTTTACAAATGGATCTGGACACGGCCAATATAAGAATGTGAAGAATGAACCTACTTCTGGTGATGCTCCATCCCCTTATACGGATATTTCAAACGCTGAAGATGACATGGGTGAAAGGcaaacGATCTCAGGAATGACTCCTCACTCAATATACGGGGAATCAAAAGGTGGTATTTCATCAGGAATCGCGAATTACGTACCGACATCGAGACCTGAGTGGAAAAGATACAAACAGTATACACGGAATGATATAATGTCAGCTATTGAGGCGGTGAGACAACGAAGAATGAGTTGCCTCAAAGCTGCTGCTGAGTATGGAGTTCCGTCACGCACCCTCTATGACAAGGTGAAGAAGCTTGGAATAACCACCGGCCGCCCTATAAGACGGAGTTCAAACAGCAACAGAAGCGGATCATTTCAATACGGTTTCCCTGGTAGCGGTTCAGTTGTTTATTGTGGAAATGAAGAGGACAACAAGTTTTCTCCTAATGTAATGGACCAGAGTTTCCTGCATCACGTACTAGATGCACAAAACATTAAACGTGAAGACTATGAGAGGGAAGCGATCGCAGCGTTAGTGGCAGCCTCTAACACAGAAAACAACTCCCTTCAAAGTGGCAACTCCTCAAGTCCAGGGAATCATGAACGCAGTCCCAGCCCCAACTTGATCAAGTACGCCCATAGAAGAAGCCCCAGCCCAGTTTCACCTCAACAGATGGAGGAAGATTCAAATCAAGTGGAAGATCTGTCAGTGTCTCGGAAAACGGACAACCCACCTCCTCCTCCATCACGGGTAATTATGCCTCCTATGAGTCAAGCGCCTGCTATGGTCACTACTGGTGGTGATCAGCAGGAAAACGCTGAATGA
- Protein Sequence
- MANQQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLACEGGTSVKCHKMVLAACSSYFQGLFTELPCRHPVVVLKDVRYDEMKAILEYMYRGEVNVAQNQLAALLKVAEALKVKGLVEENGSASQPKRTEEEGNAITTSTPAQAPPSSSVSSEECPPHSTGVHGGSYFSKIPYSLYGKSGDRNRLNSTPPTWPVPSISGPDNPPSSTAHTPTGSGTINRCYDSAPSDMPPLRRKKFTNIMMSKETPILRSVLGQGQADSSQPVSLVCRPDSFEQGNHSPFTNGSGHGQYKNVKNEPTSGDAPSPYTDISNAEDDMGERQTISGMTPHSIYGESKGGISSGIANYVPTSRPEWKRYKQYTRNDIMSAIEAVRQRRMSCLKAAAEYGVPSRTLYDKVKKLGITTGRPIRRSSNSNRSGSFQYGFPGSGSVVYCGNEEDNKFSPNVMDQSFLHHVLDAQNIKREDYEREAIAALVAASNTENNSLQSGNSSSPGNHERSPSPNLIKYAHRRSPSPVSPQQMEEDSNQVEDLSVSRKTDNPPPPPSRVIMPPMSQAPAMVTTGGDQQENAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00884318;
- 90% Identity
- iTF_00884318;
- 80% Identity
- iTF_01365623;