Scal035501.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- bab2
- Assembly
- GCA_963920205.1
- Location
- OY986061.1:15165887-15168634[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-18 7.5e-16 58.8 0.0 2 43 280 322 279 324 0.96
Sequence Information
- Coding Sequence
- ATGGCCGTTCAACAGTTTTGCCTGAGGTGGAACAATCATTTGCCAAACTTCATTTCTGTATTTACGAATTTACTCACGAAAGAGCTGCTAGTTGATGTCACATTGGCTGCAGAAGGGAAACAGCTTCAGGCGCACAAGGTGGTCTTATCTGCGTGTAGTACATATTTTCAGTCTCTGTTCACATCTAACCCTTGTCAGCACCCTATCGTTATTCTGAAAGACATCAAGTTTGCTGATTTGAAGACAATGGTTGACTTCATGTATTATGGCGAAGTGAATGTTTCTCAGGACCAGTTACCAGCTATTCTCAAGACCGCAGAAACACTCAAAGTGAAAGGTCTTGCCGAAATGCCTGAACAGCTGTCTTTGAGTAAATCCATCAGCTCCGATAAATGCGAGTCCCCGTCCCCGATATCGCCCTCAGTCTTGCGCAGGAAACGATTAAGAAAATCCTCAACTGGATCCGGATCTGAGCAAACCAGCGAGGACACGGCAGCCAGCGGGAGCACCGATTTAGTGGTTCCTTCACCTGTtaaacacgaatctgaagaaggAGTTTTGAGGCATGAAGCCAGCACGGAATCTGAACACGCCAGGGAGAGCTCGCAtagttttgaagaagaaacacCTGCCCCTCCTAGAAACATATCAGAGGAAGGAGAAAACAGTAGTAACATCCGATGGAGCAGCTCTTCAGAAGACCGTGCTGGCACTTCCTGCACACCTCTCCCTCCTCAAGGATGGAGTTTTCCGGAAGGATTCGACGTGAGAAGCTGCGAGTTCTCTCCATTTCCTTACGGTCCGGTTCGTCGGAAACGCTCAGTCAACCCCCAGATGGAGGAAAACTTTATCGCCGCCCTCGAAGCCGTCAGGAGCGGAGGACTGGGGTTCTGCAAAGCGGCCAAAATCTACGGAGTGAACAACCGAACGCTCTGGCTAGAATACAAAAAGAGAGGCTACCCTTTGCGGCCTAGCACCAAGTCGAGAGCGATGGTCTCCGAACAGCAAACCATGATGCAGAACATGATGCGCAACTTCAATCCCAACAATTCCCTGGATGTAGCATGTTCTGTTCCAAAAATCAAACTGCCTCCACCTCCTTCGCCAAACTTCCACAATAATATTTCCCAGAATAGCACTCCGACTGATTATACCACACCATTATTCAACTACAGTACGTTGTGA
- Protein Sequence
- MAVQQFCLRWNNHLPNFISVFTNLLTKELLVDVTLAAEGKQLQAHKVVLSACSTYFQSLFTSNPCQHPIVILKDIKFADLKTMVDFMYYGEVNVSQDQLPAILKTAETLKVKGLAEMPEQLSLSKSISSDKCESPSPISPSVLRRKRLRKSSTGSGSEQTSEDTAASGSTDLVVPSPVKHESEEGVLRHEASTESEHARESSHSFEEETPAPPRNISEEGENSSNIRWSSSSEDRAGTSCTPLPPQGWSFPEGFDVRSCEFSPFPYGPVRRKRSVNPQMEENFIAALEAVRSGGLGFCKAAKIYGVNNRTLWLEYKKRGYPLRPSTKSRAMVSEQQTMMQNMMRNFNPNNSLDVACSVPKIKLPPPPSPNFHNNISQNSTPTDYTTPLFNYSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01365617;
- 90% Identity
- iTF_00884316;
- 80% Identity
- iTF_01365617;