Scul012848.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024774.1:13300119-13303081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8 7.7e+02 1.3 0.4 8 23 301 316 300 316 0.89 2 11 0.0066 0.64 11.0 0.7 1 23 321 343 321 343 0.97 3 11 0.00011 0.01 16.7 0.9 2 23 353 374 353 374 0.97 4 11 0.00084 0.082 13.9 3.2 1 23 455 477 455 477 0.94 5 11 0.00012 0.012 16.5 1.5 1 23 553 576 553 576 0.96 6 11 7.7e-06 0.00074 20.3 1.7 1 23 616 638 616 638 0.96 7 11 0.00019 0.019 15.9 4.0 1 23 652 674 652 674 0.96 8 11 0.00018 0.018 15.9 4.7 1 23 680 702 680 702 0.98 9 11 0.0016 0.16 13.0 3.2 1 23 708 730 708 730 0.98 10 11 5.5e-05 0.0054 17.6 6.5 1 23 736 758 736 758 0.98 11 11 0.00026 0.025 15.5 0.3 1 21 764 784 764 785 0.93
Sequence Information
- Coding Sequence
- ATGGAAACTTCGACGAAAAGCAACAGTTCGTCGGTGCACAACAATGGCCTGTGCAGAGTTTGTCTGTCTGCGAACGAGGACAACAAGTGTATTTTTACCTTGCACAAAAATCTTGACCATGAAAATTATAGCTTCTCGAACTTGTGGGAAAAACTCCAACTGTACGGAGGCATAGAGGTTGTCCAGAACGATGGGTTTCCCTCAAAGATGTGCAGCGAATGCATATACAAGATGCGCATCGCTCATTGCTTTAGAACTCAGTGTCAGGAGACAGACAGAATACTGCGAGCTGCGTACAAGAACAACTTGAACGTTCAATGCTGGACGACAGAGGAAGTCGCCCATGTCAAGACAAAAATGGGAGAGATCAACAAACTACACAAACCAGAGGAGATTCCTGGGTACAAATCTATAACAAGCCCTGTTACGGAAATCACGGCACCTCCGCGTTCGCCCCAAGactcggaaaaaataaaaatttctgtcGTCGGTAAGGTAGGTGACGACGTGTCGGTAACGACGAAAGATTTTTCCCAAACTCAAAAACTGATTATCGCTAAGAAAATGAACTTTGAAAAGGGGCAGAAACCACGGAGACTTTGCAACGATAAAACGGCGGAAAATAGGCTCGAGCCTGAAGAGGCCACGAAAGAAGTACCTACCAGAGCAAAGGAGGATGCGCCACTCTTGAAGAAAGAACTGTCGCGGTCTCGACGGTTAGTCGTTTTCAAGAGGGTGACCTCGATGCAGAGTTTGAAGAATTGCAAGGAGCGCCAGAGgcagtacataaaaaaaacggtaCACGGAAAAAGCGACGGCAACGACGCGGAGACTGTTCAGACTGGGAAAAATAATGGCAGCGGAGCGCGACGAGTATCGGATAGCGGTAgcgtatataaatataaatactcGAGCAAAAGATCCTTGGAATCGCACGAGCTCAACCACGACTGCGACGAATTCTCTTGCGACCGATGCAACGAGAGATTCGGCAGACTGTACGATTTCCTGGAGCACGCGAAGTTACACGATCCGAAGGAAAAGCTCAAACCGGCGAGTTGCAAAatatgtaacaaaaattttcgcaAAGCCGTCACGATGATAAGGCACCTCAACGTTCACAAGAGGGACAATCCCAGGGCGGTGTACACGATCCTCAAGGACATCAGGGACAGAAGAAAACTGAAAAGCTTCGAGAGTCCGATTGaggatggaaaaaatgttaaaattttggataaaaaaatttctccggAACTCGGTAAATGCGAAGGAAGGCTGAAGAATGAGCGCGATTTCGAGGCGGATAAATTGAACGTCGATTCGAACAGCTACGACGATTCGCCTTCGGACAGTACCCGAGCTTTCAATTGCGAGCGATGCGGTAAACGCTGCTCCAGCGAAGAGTCTTTGCAAAGGCACTCTTCGAACCACGATGAACGGACCTTCGTGTGCACCGtgtgcgatgcaaaaattGTCGGGGAGGAGATCCTGAAGAGTCACACGAAAATTTGTGGTCACGCGATGGAAAAAACGAGGCAAAACCCGCGATTCGTCGTTCACCTGGAAGCGCAAAATCCACCCGACGACAGATCGGCGATGAAATTGATAAATATCTGGATAAAAGAAGAACTCGATTCAGACAACGAGGGCAAAGGTTTCCCGTGCGATAGTTGCAACAAATCTTACGTGACGAAGAAGTCGCTGTCGAAGCATCGCGCGAAGATGCACGAAAATGTTGCGGAAAAAGGAATCACTCATCGCTGTACGATTTGCGACGGTAAGGATTGCGACTGCGTCGATAGGATCAAGGAGAACCGGGACGATCCGCAGGAGAAATCGAAGTCGCACACGTGCGAGGAGTGCAATAAAACTTTCGAGAAGGAATCGAAACTCGAGAAACACATGGGCATACACGCTCGCGCAAAGGAACAGCGGGATACGAATTTCAAACGTTTTCTCTGTCATATCTGCAGCAAAACGTTTCGACAGAACACCGGCCTTATGTTTCACATGCGTACGCACACGGGTTACAAACCTCACGTCTGCAAATATTGCGGTCGTGGTTTTACCTCGAATTCGAATTGTATAAATCACGAGCGCACCCACACAGGCGACAGACCTTTCGTTTGTCACTTCTGCAGCGCGGCTTTCGCGAAATCCTGCACGCTGAAAGCCCACATAACTACGCACACCGGCGAGGCTAATTATCACTGCAAGACCTGCGGTAAATCATTCAGAAGATTGAAATACCTTAAGGAGCACAGATTCACGCACACCGGCGAGAAGCCTTACGCATGCAAGATATGCGGCACCGCCTACAGTCATTCGGGTAGTTTGTTcgttcatgaaaaaaaatgcaaagccCAGCAAGTAAATTATCAGGCTCTGTCGGTGCCGGTGTCGCAAAATTACTGTGAAAATCAACCGGTCACGATAGGAGAATTCTCGGCTGCGATAGCTCCCATAACTGGAACTCTGACGGCTTCCCACGATGTTATCTCGATTAATAACTCGTTGAGTACacacgagaataaaaattatgtcgACGGTGTTACGAGGATAAGCGCTCAATGTACGAGCGAGGCTACGGGCGCGCTGGTCCATCCGAGCACGGTCAATCCCGAAGTACCCTCGGCCGGACGAAGTTTCACCATCATCGGCCAAATGTTTCATACGTAA
- Protein Sequence
- METSTKSNSSSVHNNGLCRVCLSANEDNKCIFTLHKNLDHENYSFSNLWEKLQLYGGIEVVQNDGFPSKMCSECIYKMRIAHCFRTQCQETDRILRAAYKNNLNVQCWTTEEVAHVKTKMGEINKLHKPEEIPGYKSITSPVTEITAPPRSPQDSEKIKISVVGKVGDDVSVTTKDFSQTQKLIIAKKMNFEKGQKPRRLCNDKTAENRLEPEEATKEVPTRAKEDAPLLKKELSRSRRLVVFKRVTSMQSLKNCKERQRQYIKKTVHGKSDGNDAETVQTGKNNGSGARRVSDSGSVYKYKYSSKRSLESHELNHDCDEFSCDRCNERFGRLYDFLEHAKLHDPKEKLKPASCKICNKNFRKAVTMIRHLNVHKRDNPRAVYTILKDIRDRRKLKSFESPIEDGKNVKILDKKISPELGKCEGRLKNERDFEADKLNVDSNSYDDSPSDSTRAFNCERCGKRCSSEESLQRHSSNHDERTFVCTVCDAKIVGEEILKSHTKICGHAMEKTRQNPRFVVHLEAQNPPDDRSAMKLINIWIKEELDSDNEGKGFPCDSCNKSYVTKKSLSKHRAKMHENVAEKGITHRCTICDGKDCDCVDRIKENRDDPQEKSKSHTCEECNKTFEKESKLEKHMGIHARAKEQRDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQQVNYQALSVPVSQNYCENQPVTIGEFSAAIAPITGTLTASHDVISINNSLSTHENKNYVDGVTRISAQCTSEATGALVHPSTVNPEVPSAGRSFTIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905634;
- 90% Identity
- iTF_00721504;
- 80% Identity
- -