Scul022268.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024781.1:6360372-6363902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 1.4e+02 3.7 0.3 3 23 261 282 260 282 0.96 2 10 3.2 3.1e+02 2.6 3.6 1 23 288 310 288 310 0.98 3 10 5.7e-05 0.0055 17.5 1.0 1 23 316 338 316 338 0.96 4 10 0.00025 0.024 15.5 3.2 1 21 344 364 344 366 0.93 5 10 6.7e-07 6.5e-05 23.6 0.8 1 23 375 397 375 397 0.98 6 10 1.6e-07 1.5e-05 25.6 0.5 1 23 403 425 403 425 0.98 7 10 9.8e-06 0.00095 19.9 0.6 1 23 431 453 431 453 0.96 8 10 1.5e-05 0.0014 19.4 2.9 1 23 459 481 459 481 0.98 9 10 0.0008 0.077 13.9 5.2 1 23 487 509 487 509 0.98 10 10 0.00018 0.017 16.0 5.8 1 23 515 538 515 538 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAGCCGGAGCTCTGCCGGCTCTGCGCCGAGACGAAGGAAGAGCTTATCGGTATCTACGACGCCGAGGGTCAAAAACTCTCGATCGAGACCAAAATCGCCAAGTGCCTACAGAtacagGTGATAACAAACGACGGTCTTCCGCTGTCCGTTTGCTTTGACTGCTGTGTGCTGCTCAATCAATGCAACGACTTCATCGAGAAGACCAATCGCGCTCAGGAGTCGTTGCAGAAGTTGTTCCTCGAATCCAAGGAGGGGTTGGAAATTTTGGAGCCAAATATCGACTACGTGGAGAAAACTGTGGAATATCCGAAAGGCGAGTGCGAGGAAGCCGCTGGTGATTGCTCGCTGTCCGACAATTACATCACGGAAACCGCGGATGACATAGGAGAGGAGTATTATCGCAATGATAACAACGACAGCGAATTCGAGTGCAAGCAGGAAACGTACTCAGAGCAAGAGCCGTGCAagcagaaaaaatataaagccGCGGCGAAGAAAACGCCGCCCAAACAGACCAAGAAAAAGGTCAAGAGGAGAACACAGCCCAGAAAGATATCGAACTCGGACGTCGGGGCTACCACGTCTGACATGGAGGAAGATCAGAACGAAGTTCGCGGTTCTCAGGATTTTCAGCACTCCAAAGCCGGCGGCAAAATTCCGGACAATTATATGACCGGAACCGACTCCGATATGGAGATGATCGAAGCCCGCGCTGCTGAGCCCGCGAAACCGGGCCGAAATCGTGGCGAAGGGTTGGACAGACATCCCTGGCTCTGCACCGATTGCAACGACAAACTGCCGAGTTTGGAGATGCTCGAGGAGCATCACGAGACCGTTCACAATCAGCAGGCTAAATACATGTGTGTTCAATGCTGCAAGGTTTACGACAAGTATTACGGATTTCTCACTCACGTTAAGAGGCACAAGAACACATCGAAGTTCaaTTGCGAAGATTGTGGAAAGTCCTTCGTCCACAAAAAAGTACTGGACTCTCACAGAGCGGTTCACAGCGAGGAGCGTCCGCACGTTTGCCAAACGTGCGGCAAAGCGTTCCGACAGCAGAGCGCTCTGTACATTCACAGCCGATGTCACTTGCCAGAAACGATGAAGAATCGTTTTCCCTGCGATCAGTGCGACAAAAGATTCTCTACCAAGCCGAATCTGGTTACACACAAGCGGATACATTCCGGTGTGAGAAACTTCACGTGCGACCAGTGCGGCAAGAGTTTCATACAGAAGGGCAATCTGGAGGCTCACTTTCTCACGCACTCGGCGGACAAGCCTTACAGCTGTTCGCAGTGTCCGAAAGCTTTCAAAACGCCTCTGCAGTTGAAGAAACACGAGACCGTGCACACAGGCGCGAAGCCCCACCAGTGCGCCGTTTGCGGACGGACCTTCCGGGAAAAGGGCACGCTGAGGGAACATCACAGAATTCACACGGGCGCTATGCCATTCACTTGCGAATTCTGTGGTAAATGTTTTCGGTTCAAGGGAATACTGACCACCCACAGAAGGCAACATACGGGCGAACGCCCCTACAGTTGCTTGGAGTGTCAGCATCACTTCACGAACTGGCCGAATTACAACAAGCACATGAAGCGCAGACACGGTATCAATACATCCCACACAAAGCATCTGCAGCAGCCACAGCAGCAATCGACGCCGCAGCAGCAACGCACTGAATCGGAGGATTCTGTGCCGCGTCAAAATCCACCGACGCTTCAAGTAATCCACGCAGGCCCGGTCGCCTCCATATCTCAGCCGATAGTGGTCCAAGCTATACCGACTACAACGGCGTTGCAAAGCTTCCAAACTGAGGCGCCCGTTACCGTGCAGGAATCAGTTTTTCGCGAACGAAACCCAACGTACTTCAATAGCGTGCCGATACAGAACTTACTGCCGGCCAATCTGCCGCAATACAACTTTTACAGTATCTCGAGCGTCTCGGAAGGCGATCTCATTCAGCACAGATAA
- Protein Sequence
- MSEPELCRLCAETKEELIGIYDAEGQKLSIETKIAKCLQIQVITNDGLPLSVCFDCCVLLNQCNDFIEKTNRAQESLQKLFLESKEGLEILEPNIDYVEKTVEYPKGECEEAAGDCSLSDNYITETADDIGEEYYRNDNNDSEFECKQETYSEQEPCKQKKYKAAAKKTPPKQTKKKVKRRTQPRKISNSDVGATTSDMEEDQNEVRGSQDFQHSKAGGKIPDNYMTGTDSDMEMIEARAAEPAKPGRNRGEGLDRHPWLCTDCNDKLPSLEMLEEHHETVHNQQAKYMCVQCCKVYDKYYGFLTHVKRHKNTSKFNCEDCGKSFVHKKVLDSHRAVHSEERPHVCQTCGKAFRQQSALYIHSRCHLPETMKNRFPCDQCDKRFSTKPNLVTHKRIHSGVRNFTCDQCGKSFIQKGNLEAHFLTHSADKPYSCSQCPKAFKTPLQLKKHETVHTGAKPHQCAVCGRTFREKGTLREHHRIHTGAMPFTCEFCGKCFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHTKHLQQPQQQSTPQQQRTESEDSVPRQNPPTLQVIHAGPVASISQPIVVQAIPTTTALQSFQTEAPVTVQESVFRERNPTYFNSVPIQNLLPANLPQYNFYSISSVSEGDLIQHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01057862;
- 90% Identity
- iTF_00058927;
- 80% Identity
- -