Scul011070.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024773.1:9953117-9955577[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.6e-05 0.0035 18.2 2.4 1 23 326 348 326 348 0.98 2 12 0.016 1.6 9.8 6.5 1 23 352 374 352 374 0.98 3 12 0.025 2.4 9.2 4.8 1 21 379 399 379 401 0.93 4 12 1e-05 0.00096 19.9 3.1 1 23 450 472 450 472 0.98 5 12 0.0013 0.12 13.3 0.8 1 23 477 499 477 499 0.96 6 12 0.0064 0.62 11.1 4.0 1 20 549 568 549 571 0.95 7 12 0.024 2.3 9.3 0.5 2 23 579 600 578 600 0.97 8 12 1.1e-06 0.00011 22.9 2.1 1 23 611 633 611 633 0.96 9 12 7.2e-05 0.0069 17.2 1.0 1 23 639 661 639 661 0.98 10 12 0.00018 0.018 15.9 0.7 1 23 667 689 667 689 0.98 11 12 5.5e-06 0.00053 20.7 2.0 1 23 695 717 695 717 0.96 12 12 9.8e-05 0.0095 16.8 0.3 1 22 723 744 723 744 0.96
Sequence Information
- Coding Sequence
- ATGGCTATGAATTCGAGCTATTTCGATCATCCGATAAACATGGACAGAGTTTGCAGGGTATGCTTGGTGGAAGGTACCAACTTATCACCAATATTCTGCGCAGACCAAGAAGATGGCCTTTCCCAAAAGATTCAAGTATGCGGATCCATTGAGATACATGAAAACGATGGTTTACCATCTTCGATATGCAACGTGTGTATCTGCAATGCCAGTGTCGCTCACGAATTTAGGCAGCAGTGTCAGCGCTCCGATACTCAATTGAGGCTCATTTACGACAAGCCCGTCAGTTCTACCATTGATTCTTGTACGCAGACTGAACCACAAACACGGATAATTCTAACGAGAAAAGTGCCGAGTCCACCAACGCCTTACTTCGTGAAGCAAGAGTTGCAAACAGCTACTTCGCACGACTACGCGACCGCTATCGAAGCTTACACGGAGAGCCACGACACGGTCCCGGAAGAACGGCACCAACGGCACGAAGAACAAGAGGAGCATCCTATAGAGTGCCAGGACGAAAAGCTATTTCTCTGTAACATCGCGCCATTCGACACATCCaaagaaataattgaaaaagaagGGACAAATATTCTGACCCATAATCCTCACCAAGTTCACTGTCCTCCTGAAAATACGGTAATTCCGAAGGTAACCCTCGTAACGATAAATATCAATGGTCAATTGGAGGAGCAAGAATTAATCGTAAAGGAAGACGACACGAAGTGCATAGAAACGGAAATGGAGGAAGAATATTTGAACGAGCAATTGTTGAACGAAAGCATCGTGGAAAACGTGGATGAGAATAACGCGGAGGACGAAGAGCTCGATGAGCATCAAGAGATACCCCAACAGAAACGAACTTTATCACGAAAAGTAAAGGCCGCTTCGACGAAATCGTACAGTGAAGACGAGATATGCGACGAAGATTACTTCGAAGCGTTGGCGGACGATAATCAAGACTCCGAGGAGCGGAAATTCAAGTGCAATGTATGCTCGAAGCGTTACACGACACAAAAAGGTTTGAAAAATCATTCGCAGGTACACGACAAGAACCACAAGTGTCCAACCTGCCACAAGCTATTCTACAAGctgaaaaatatggaaaatcaCAAAAAGATTCACGCTGCCAAGCCTCATGCTTGTCAGCTCTGTCACGTGAGTTTCTCGAAGCCTCAGAGTCTCGTTCGTCACTTGAAATGCCACGCCGATAAATCGAGCGACCAAATGGCGCAAGGAACAAACGTCGAAGATCCCGGCAAGGAGATCGGTCCGACAAAGAGCGATGGTGACACGGACGACGAGACGGGAACCAACCAAGTCGACGATTTCGAAAACGCTCCGGGTCTCTACAAGTGCGAAGATTGCGGTCAATTTTGTTCTTCGCTAAAAAATTTGAAGCGTCACACTCTCGTACACGGTGACAAAAAGTATGCCTGCACTGTATGCAAAAAATGGTTCTTCAGGCCGGACACACTGAAGAAACACGCGGAGAAGCACGGGCATGGATTGCTCGACAATCTTGCGGAGGATAACAAGTTATTCGATTCGGACGACGACAGCTTTCCGAATTCCGGGGTTCCGTCGGCGGCGAACGCCGAAACGGAGAAGAAGGAAGACGACATCGAGGCCAGCGGCAGAGGAGAATACAAGTGTCAGCATTGCGACAAGGTAATGCCAACGAAAAAGGGACTCAGAAGACACGTGTCTTGTCACAAACCCAAACCTGAACCGGTAACGtgtgaaatttgtaaaaaaatatgcgcCAGCGGGGCGCGTTTGGTGCTTCATCTAAAGACTCACAACAAATCGAAGGAAAAGGTCCAGAGAGAATATCTGTGTCATATATGCAGCAAAGTTTATCCCAGCAATTCCTCATTGACTTATCACATGCGAACTCACACGGGGGTCAAGCCGCACGTTTGCAAAATTTGTAATAGTGGTTTTACAACGACAACGAGCTTGGCGAATCATATACGCATTCACACTGGGGACAAGCCTTTCGTTTGTCACGTTTGCAGTGCAGCATTCGCGGTGAGCTCGGCTTTCAGGCGGCACCTTACGAGACACACCGGCGAGGCTAATTATCTTTGCAAAACTTGCGGCAAAGCTTTCAAAAGACTGAGCACTCTGAAGGAACATACCTACACGCACTCTGGTGAAAAGCCTTACGTTTGCAAAACTTGCGGGGCAGCGTACAGTCACAGCGGAAGCTTGTTCGCTCATCAGAAACGTTGCAGAGTGCAGTACGGTGAAATGCTCGAGGAACAGCATACCGCTGCTCATCATATTCACGTCAACAACGTTCAAACCGCAGTCAGATCGCTCGCGGTTATCGGCCAGATGTATTAG
- Protein Sequence
- MAMNSSYFDHPINMDRVCRVCLVEGTNLSPIFCADQEDGLSQKIQVCGSIEIHENDGLPSSICNVCICNASVAHEFRQQCQRSDTQLRLIYDKPVSSTIDSCTQTEPQTRIILTRKVPSPPTPYFVKQELQTATSHDYATAIEAYTESHDTVPEERHQRHEEQEEHPIECQDEKLFLCNIAPFDTSKEIIEKEGTNILTHNPHQVHCPPENTVIPKVTLVTININGQLEEQELIVKEDDTKCIETEMEEEYLNEQLLNESIVENVDENNAEDEELDEHQEIPQQKRTLSRKVKAASTKSYSEDEICDEDYFEALADDNQDSEERKFKCNVCSKRYTTQKGLKNHSQVHDKNHKCPTCHKLFYKLKNMENHKKIHAAKPHACQLCHVSFSKPQSLVRHLKCHADKSSDQMAQGTNVEDPGKEIGPTKSDGDTDDETGTNQVDDFENAPGLYKCEDCGQFCSSLKNLKRHTLVHGDKKYACTVCKKWFFRPDTLKKHAEKHGHGLLDNLAEDNKLFDSDDDSFPNSGVPSAANAETEKKEDDIEASGRGEYKCQHCDKVMPTKKGLRRHVSCHKPKPEPVTCEICKKICASGARLVLHLKTHNKSKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMLEEQHTAAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058136;
- 90% Identity
- iTF_00905596;
- 80% Identity
- -