Scul014655.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024775.1:16670840-16674518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.051 5 8.2 0.3 6 21 12 27 7 28 0.88 2 14 0.51 50 5.1 0.0 2 20 34 52 33 53 0.93 3 14 0.59 57 4.9 0.2 1 12 212 223 212 232 0.89 4 14 0.05 4.8 8.3 1.8 1 23 370 392 370 392 0.96 5 14 0.00056 0.054 14.4 0.1 2 23 396 417 395 417 0.97 6 14 0.0012 0.12 13.3 1.9 1 23 429 451 429 451 0.98 7 14 0.034 3.3 8.8 0.3 1 23 470 491 470 491 0.94 8 14 0.0003 0.029 15.3 0.1 2 23 497 518 496 518 0.95 9 14 5.4e-05 0.0052 17.6 4.8 1 23 567 589 567 589 0.99 10 14 2.3e-06 0.00022 21.9 3.7 1 23 595 617 595 617 0.96 11 14 0.00027 0.026 15.4 4.1 1 23 623 645 623 645 0.97 12 14 1.6e-06 0.00016 22.4 0.8 1 23 651 673 651 673 0.98 13 14 0.0001 0.0099 16.7 0.2 1 23 677 699 677 699 0.99 14 14 0.00023 0.023 15.6 0.1 1 23 707 729 707 729 0.98
Sequence Information
- Coding Sequence
- atgggtTCGCTGAGTCTCGCTTGTCCGATGTGCTGCGGCGAATCGTTCGACAATTCGCAGTCGCTCAAGTATCACTTGTTGAGCATGACGGACAATATTTACTGTCCGAACTGCGACCAGCGTTCCGACTCGGTGGCCGCGTTGATACAGCACTTGGACTGCTGCGGACAGAGCGAGGAAACCAAGCAGATTCTGCCGCAGTGCGAGGAAGCTCGACTGGCCTGCGACGGAGTTGCTATGGGAAGGCAAGCGGAAGACGTGCACAGCAGTTTCATGGCGACGGTGGGTAAGGACGGTACTTTAATCGTCGGCGATCCGAGCACGATGGGCATTAACGAACATggTGGCATTCGTGTGGTAGAGAGCATGGAGACCGACGAGAACAACTGCGGTGATGGGGATAATATAGAAAATGTACAAGAAACGGAATGCCTTAAAAGTCcgaatttcgagaaaaacgatcGAGTCGAAAAAATCGCGGAGTCGGTGAAGGATGGAGCAAAATgtgaggaggaggagaacgaTTCGAGTCTAATAGGAATAGAGCATCTGGACGAACGAGAATCGATTCAGGAATTGGATGAGGAAGGCCTGCTGGAAGTGAAGAAAGAAATAtgcgagGAAGAGTCTCTGTACAGCTGCAGCAGTTGCGGCATGAGTTTCAACAGTGTCCTGGAGCACATAAAGGAGTATCACGACGGTCAGGAGGTCGTTCTCGAAATGGCCGAGCAGCAAATCGACGATTTGCCCGAGGAGGATAATTCTCCGACGGACGGTTGCTCGCGTCTGGCGGAGGAGAATTGTTCCGCAGATCGTCAGACGGGGACCTCGGAGAGCGTGCCGCGCCAGCGTCAGACAATGAACACACTGAGGACCGAGGAGTGCGTCGACAGCGAGGGACGCCTTTACACGAGGAAAGTCGTGCAGATCGAGAGATTCTGGGACCGCGCCGCGGCCGTCTCACAgtcgcagcagcagcagcaacagcccGCGAAGAGCGGACCGATGATCGAGAAATTCTTCTCGAACGTCGAGGGTGTGAAAATGCGAACGAAGAGTCCGACGAGCGCTGCGGCGCCCACCCAGTCGAGCGCACCCCAGAGAATGTACAGATGCAACAAGTGCCTCGAACAATTCGCGAAACTCGTAGACTTTCGCGTTCACGCTTGCCTCCACGGCAACAATCAGTGCGAACTGTGCGAGCAGGCGTTCGCAAGCGCGAAAGCTTTGCAGGTGCACTCGCGGATTCACCAGGTCGAGGTGGACGGTGGAAACGGAAAGAATTTTATCTGTCCGACGTGCGCGACTGAATTCTCGTCGCACAAGAGCCTAAGATTGCACTCGAGGATGCACGCGCCGGTGAGAGCGAGACACGTCGATGCGCCCGAGGGAACGGCCAATGGAAGTTTTACGTGCCTCGAGTGCGGGAAAACTCTGTCGGAATCGTACAGAATAGCACACATGTCTTTACACACGGGGGAATCTGTTACGTGTTCCATTTGCAATCGGAAGTTCGATTCGTCGGATAGTCTAGCGATGCACGCTGCGGTGCACACCGAAGTTGGTCAATCGCAACAGCAgccacagcagcaacagcagcaaaaTCAAATAATGTTGATACAGAAACAAGATGAATTCGGTGGAGAAGTGAGACAACCTGGAGACGCAGGTGCGGATACTCTCGATCCTCAAAAGCCTTATCAGTGTCAGCACTGCGGAAGAAGATTCACGAGACCTCACGAGAAGGTGAAACACGAGAGGATACACACGGGAGAGAAACCCCACGCTTGCGAGGTATGCGGCAAAACATTTCGGGTCTCCTACTGTCTGACCCTGCACATGAGGACTCACACGGGAGTGCGCCCCTACGCATGCCAGCACTGCGGCAAGCGTTTCAAAGCCTCGTCGGTCTACAATCATCACTTGCTCACCCACGGCGACGAGCGCGCCTACACGTGTCCCTACTGTCCCAAGACCTTCAAGACCCGAGTCCAACTCGCCGGACACAAGAACAGCCACACCAAACCGTTTCGTTGCACCGAATGTTCCCGTCCATTCGCCTCCCTCTACGCCGCCCGCGCTCACATTCAGACCCACAAGAAGGACAACAATTTGAAGTTCAGCTGTTACATATGCGGCGCCTCGTACGGGCGCGCATTCGCTCTCAAGGACCATCTGAAAATTCATGCCGAGCAGGACGTCGCCGGGACCCCCGAAGCAGCTCGCGAGGAGGAGGTCACCGAGGCCGAAGATTATCTCATTACCGAAGAGACCGACGAgttcgaggacatcgaggagaTTGAACGGGAAGAGAAGGAACTCGTCGCTGTCGCGGCTGCCGTCGGCGTCACCGTAGACGAACAATCCGAATGA
- Protein Sequence
- MGSLSLACPMCCGESFDNSQSLKYHLLSMTDNIYCPNCDQRSDSVAALIQHLDCCGQSEETKQILPQCEEARLACDGVAMGRQAEDVHSSFMATVGKDGTLIVGDPSTMGINEHGGIRVVESMETDENNCGDGDNIENVQETECLKSPNFEKNDRVEKIAESVKDGAKCEEEENDSSLIGIEHLDERESIQELDEEGLLEVKKEICEEESLYSCSSCGMSFNSVLEHIKEYHDGQEVVLEMAEQQIDDLPEEDNSPTDGCSRLAEENCSADRQTGTSESVPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRAAAVSQSQQQQQQPAKSGPMIEKFFSNVEGVKMRTKSPTSAAAPTQSSAPQRMYRCNKCLEQFAKLVDFRVHACLHGNNQCELCEQAFASAKALQVHSRIHQVEVDGGNGKNFICPTCATEFSSHKSLRLHSRMHAPVRARHVDAPEGTANGSFTCLECGKTLSESYRIAHMSLHTGESVTCSICNRKFDSSDSLAMHAAVHTEVGQSQQQPQQQQQQNQIMLIQKQDEFGGEVRQPGDAGADTLDPQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKIHAEQDVAGTPEAAREEEVTEAEDYLITEETDEFEDIEEIEREEKELVAVAAAVGVTVDEQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721447;
- 90% Identity
- iTF_00059625;
- 80% Identity
- -