Scul002277.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024768.1:15381520-15385968[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00044 0.043 14.7 0.1 2 23 294 315 293 315 0.96 2 11 0.00073 0.07 14.1 0.3 1 23 321 344 321 344 0.96 3 11 1.2e-05 0.0011 19.7 3.2 1 23 384 406 384 406 0.98 4 11 6.4e-07 6.2e-05 23.7 1.5 2 23 446 467 445 467 0.97 5 11 0.00021 0.02 15.8 2.8 1 23 472 495 472 495 0.96 6 11 1.2e-06 0.00012 22.8 0.6 1 23 533 555 533 555 0.98 7 11 8.9e-07 8.6e-05 23.2 0.9 1 23 565 587 565 587 0.96 8 11 2.5e-06 0.00024 21.8 1.2 1 23 593 615 593 615 0.99 9 11 1.3e-05 0.0012 19.6 0.2 1 23 621 643 621 643 0.98 10 11 9.6e-05 0.0093 16.8 4.6 1 23 649 671 649 671 0.98 11 11 0.00047 0.046 14.6 0.3 1 21 677 697 677 698 0.94
Sequence Information
- Coding Sequence
- ATGAACGTTACGAATGAAGAAGACACGGTAGTAAATACCGTCGTAAAGTTACAAGTCACCGGCACGGAGTGTCGggtttgtttaaaaaaatgcaacgaaGTTTGGGAATTGTTTGATCGAAGCGCCGAGGATATACCGAGAAAGTTAATGGCTTGCGCTGCTGTGCAGGTGGAAGAAGGTGACGGACTGCCGACGACGATATGCCAAAACTGTCTGAGGCTCCTAGAAGTGTCCTACGAATTCAAGCTCCAGGTGGAAAGGTCGGATTCGAAGTTGCGAGAGATCATGATTTTCAAAGTACCCGTCGGCGAGGATATCCTCGCCGGTTCGTCCGACGGCGTTGTCGCGGGGCCGATGGGGGACGAAATAACGCAGGAGCGCGCCATCGACGAGGCCGGAGAATGCGCGGAGTTGTCGGGCGCCCTGGACGAGGCAACGGATCGCATAGTAACGTCCCTGAGCGACCATCGCTTCGTCGCTCATCACGAGAGGATTATCTTCGAAATTCAGCCTCCCGCCGAACAGGAGTCTGTTATGGAGCGAGAAATGAGTCTCGATAACGAAGCGTGCGACGAAGTCGACGAGAAAACCGTTTCGGGGATCGACTGCCAGGACAACGGAGGGATCGGCGAGTTGATGGAAAAATACGAGGAGCTCCGAGAGCCTTGCATGGAGGCCGCGAGGCTGAAGTACGAGGATTCCATGGAGACGGACGAGAGCGAGATATCGGAGGACGAGAATGCCGAATCGAGCGCGCTGAATGTTTCCGAGAGCGTCGAGCGAACGAGCGTCGTCGAGGAGAGTCGCTCGAACGACGCGAAGGACGATGCGTACGAGAGCGACGAGGAGAAGCCGCTTATAAATCGAACTCTGAGGCAGAAGTGTCCTCAATGCATAAAAACATTCGCGACGAAGGCGGCGCTCGAGAGGCACGCTGAGATACACAAGACGAAATTGCGTTACGTTTGTTACATGTGCGACAAACAATTTCCGAGTATATCGAAGCTGAAGGGTCACGTTCTGAGCAGCCACGACAGTCTGCGAAACGAGGAGAAGGCCGGGCCGGAGGAGGAAAGGCGGGAGGGTGCGAGAATCGAGAAACCGGCTCAGCAGCAGTCGGGTCGATCGGAGGGCAAGAGGAATCTCAAGTTCACCTGCAAAGTTTGCGGCAAACAATTCACCTATCAGAAGTCCTTCATGACCCACGCGAAAACCCATCCGGGCTACGAGCCGGAATCGAACGAGAAGGAGGAAGGAACCGTCGTACCGGCGGAGGAGGATTCCAACGAGCGGGGCAACGAGTCCGAGGACGACGATATGCCGGTCGAGGGACTTCAGTGCACCCAGTGCGGCAAATTATTCGCGACAAAGAGAAACCTCAAGAGGCACATATCGACCCACAGCGGATTGAAATTTCACTGCTCGACGTGCGGAAAAGAATTCTCGAGAGTCGACAAACTTAAGGAGCACGAACAGTCGAAACACAACGAGGAATTGTTCGCATCGTCGGACTCGGACTCCGACGATGATACGGATAACGAGAATAAACATCACGACGGGGGCGAGAATAGGAAGAAGGAAAAACTCACCAGGCCTCATCAATGTCCCATGTGTCCCAAGGCCTTCGCTCAGGAACAATCTCTCACGAATCACATGGAGCGTCACAAACGCGTCAAGGACACGCAGAAGCGTTTTCTCTGCGAAGTCTGTAGCAAGTGTTTTGCGCAGAGTGGATCTCTGGTCGCGCATATGCGTACGCACACGGGCGTAAAGCCGTACGTTTGCAACGTTTGCAGCCGAGCTTTTACCAAAAGCACTTATCTCCAGTTACATCTGCGCACTCACAGCGGTGAGAAACCCTACATATGCCAGTATTGCAGCAGAGCCTTCGCACGGGCGAACACACTCGCTCGACACATAACCATGCACACCGGGGAAGCCAAGTATCATTGTCAGATATGTACAAAGTCCTTTCGACGTTTGACTTCGCTGAACGAGCACACCTACACTCACACCGGACAGAGGCCTTACGCCTGCAAGATATGCACGAAGAGATACAACAACGCTGGTTCGTTGTACGCTCACACGAAGAAGTGCAAGGCCCAGCAATTGTCGGGCGGCACGACGACGTACACGGTTCCCGTCGACGACGGCATTCATCAGAACGGCGGACCGGCCTCTCAGATAATGGTTTATTCCCAGAGAAAATTGGTTGACGAAACCAACGTCAGCCAAGTCCAACCCTCCTCCCAATTCATGATCACCAATGTTCACAATCCTTCGCTCAAGCCCTTGCCCACAAACATAATACCCCAGTTCGCTGTCGAGGATCCGAATTTCTGCGCGGTCAACAAACCCTACAAGAATCCCTACTACACGATATATCCGAACATGTAA
- Protein Sequence
- MNVTNEEDTVVNTVVKLQVTGTECRVCLKKCNEVWELFDRSAEDIPRKLMACAAVQVEEGDGLPTTICQNCLRLLEVSYEFKLQVERSDSKLREIMIFKVPVGEDILAGSSDGVVAGPMGDEITQERAIDEAGECAELSGALDEATDRIVTSLSDHRFVAHHERIIFEIQPPAEQESVMEREMSLDNEACDEVDEKTVSGIDCQDNGGIGELMEKYEELREPCMEAARLKYEDSMETDESEISEDENAESSALNVSESVERTSVVEESRSNDAKDDAYESDEEKPLINRTLRQKCPQCIKTFATKAALERHAEIHKTKLRYVCYMCDKQFPSISKLKGHVLSSHDSLRNEEKAGPEEERREGARIEKPAQQQSGRSEGKRNLKFTCKVCGKQFTYQKSFMTHAKTHPGYEPESNEKEEGTVVPAEEDSNERGNESEDDDMPVEGLQCTQCGKLFATKRNLKRHISTHSGLKFHCSTCGKEFSRVDKLKEHEQSKHNEELFASSDSDSDDDTDNENKHHDGGENRKKEKLTRPHQCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSGGTTTYTVPVDDGIHQNGGPASQIMVYSQRKLVDETNVSQVQPSSQFMITNVHNPSLKPLPTNIIPQFAVEDPNFCAVNKPYKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721443;
- 90% Identity
- iTF_00058891;
- 80% Identity
- -