Scul005511.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- Snai1
- Assembly
- GCA_964017025.1
- Location
- OZ024770.1:12331405-12334559[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9 3.8e+02 2.3 0.2 2 16 67 81 66 83 0.81 2 13 0.0004 0.038 14.9 0.1 1 23 256 278 256 278 0.95 3 13 2.9e-05 0.0028 18.4 1.2 1 23 286 308 286 308 0.98 4 13 4.2e-06 0.00041 21.1 0.3 2 23 316 337 315 337 0.97 5 13 6.8e-06 0.00066 20.4 0.9 1 23 343 365 343 365 0.98 6 13 2.9e-05 0.0028 18.5 2.2 1 23 372 394 372 394 0.98 7 13 8.1e-06 0.00078 20.2 0.6 1 23 400 422 400 422 0.96 8 13 1.3e-05 0.0013 19.5 0.2 1 23 428 450 428 450 0.98 9 13 6.8e-07 6.6e-05 23.6 1.2 1 23 456 479 456 479 0.96 10 13 3.6e-06 0.00035 21.3 0.5 1 23 485 508 485 508 0.96 11 13 5.5e-06 0.00053 20.7 2.8 1 23 514 536 514 536 0.99 12 13 8.8e-05 0.0085 16.9 0.4 1 23 542 564 542 564 0.94 13 13 0.00062 0.059 14.3 0.0 1 23 570 594 570 594 0.91
Sequence Information
- Coding Sequence
- ATGACGGCGaattccacaaaaaaaacgacTCACTGCTTAATATGCAACAGCAAAGTCGGTGTGTCGACTCGCAACAGCGTAAGAATATTCGACGAATCCCCACCTCAGTCGGCCGTACAGCACGAGCGGCGGCTCATCCAAACTATATGCTGTGTGCTGAAGAAAGAACTTGACGAAGAGTCTGTACATTCTGTAGTCgtgtgtaaaaaatgttacaaattGTTCACCGAGTTCGAAGAACTGGAGAATAGAATGGCTGAGATAAGAAAGGATGTGCATGAAAGCTATGAGAATACGCTCAAGAAAGTTACGCCCGAGATACCAATACAGGAGGAGTACAATGATCATGATTATATAGATAATTCTGACGGTCAAACGGTAGAAGCTTTGGATTCCAAATACGATGAGAAGGATGACAGAGAGTCTTCGCCTGTTAAAAATGTGGACGACACTGAGACCATACCTGAGTATTTGGTAGAAGAAATGGACAAGGCACACGTGGAAAACATTGAGTACATCGAGGAGCACGACGAAATACCGTTGAAAGTAGAACCATCGGTCGTAGACGATAAAAATTCTGAGACGAAGAAGAGCCAAGCAAAGAAAGGCAAAGCAACGGTAAAGATCGAGGATACTCAGGAACAAACCGTGACGCGCGACGGTACGGATTACACGTGTCTGTTGTGCATGAACGACGACGAGAGGTTTGTTGGTGACGCCAAGGAGATTGTGTCGCACGTTAAAGGGGTGCACGAGTCGCGACTGTACATTTGTGATATATGCGGTATGGATTTTAAGAAGAGAAACGAATTGTCGATTCATCTCGACGATCACGTCGCCAAGGAGGAGGGAGACTTTCAATGTGAAGTCTGCAATAGGATATTCAGTAATTTACGGTTGTTCAGAATTCACAAGCGAATACATTATCCCCAAGTTAAATCTTGGCCATGCTCGACTTGCGGCAAAAGATACAGttcgaaaaatttattggaagAACACATAAACACGCACACCGGTCTTCGGCCGTACATGTGCGAAACTTGTGGCAAGGACTTCGCCTCGAAGTACACTTACAAGGCTCACGCGAAGACTCACGAGGTTCGTCCGAGACCGTTCGAGTGCACTCAGTGCAACAAGTCCTTCCTGAGCCAGCAGAATCTCAATCAGCACGAGAGGACTCACAACGGTGTGAAGGAATACGTGTGCCATCAGTGCGGCAAGGCATTCGGCTCAGCCCACAATCTCGAAGTTCATAACATCGTGCATACTGGTTATAAGCCTTACATATGCAGAATGTGTGGCAAAGCTTTCGCGCGAAAAGCCGAGATCCGAGATCACGAGCGTACACACACCGGCGAAAAGCCCTATCAGTGCGAATTCTGCGGAGCCACATTCAGTCAACGATCGAATCTTCAATCCCACAAACGCGCGACCCACTACAACGACAAGAGATACAAGTGCGACGATTGCGGCAAAGGTTTCAAGAGAAGAAGACTTCTCGATTATCACATAAAAGCCGCTCATACCGGCGAGAGACCCTACAAATGCGAGACTTGCACGGCAACTTTCGTGTATCCTGAACACTTTAAGAAACACATGCGTATTCATACAGGAGAAAAGCCGTACTTATGCGAGGTCTGCGGAAAAGCATTCAACAGCCGCGACAACAGAAACGCTCATCGTTTCATTCACAGTGACAAAAAACCGTACGAGTGTCTCGTTTGCGGCATGGGATTCATGAGAAAACCATTGTTGTACGCGCACATGCAGATCCAGGGTCATCTAAACGACACCATAGTCGTAAACCAGCCGAGGTTAACTACAGAGGATGATCACGTAATTTCCATTCCCGAGGATGACGTTGAGTTGCTCATGGACGAAACGGAGACCGAACAGCTCGAAGAAACTGAACTGTACGTTGCCGAGCTCAAGGAACACGTTATTATTCAGCAGGGTGGAGAACACATTTATCAGGAAGAAAACGTTCTTAGCATACCAGCGGAAGAGGGTATGGAGcaggatgaagaagaagaagatcatCATCTCGTCGTCGACGGGCAGATTGCCTTTACGGAGACCGAAGTGATGCAGTGCAAGCCCGAGGATTGCGAGCAACAGGTCGAAGAAGTTTACAGTTACAACACTGGTGAGGACGGTGAAACTATAGTCGTGCCAGCGTCGTCCGATTACAAAGAGATCGTCGGTGACAAGAAGAACTCGGTACGACTTGTACAGATACGAATACCATCATCGTCGGCCGGTGAAGCGCGAAGTTGGCTTAGCCTCGTGCAGAATACATAA
- Protein Sequence
- MTANSTKKTTHCLICNSKVGVSTRNSVRIFDESPPQSAVQHERRLIQTICCVLKKELDEESVHSVVVCKKCYKLFTEFEELENRMAEIRKDVHESYENTLKKVTPEIPIQEEYNDHDYIDNSDGQTVEALDSKYDEKDDRESSPVKNVDDTETIPEYLVEEMDKAHVENIEYIEEHDEIPLKVEPSVVDDKNSETKKSQAKKGKATVKIEDTQEQTVTRDGTDYTCLLCMNDDERFVGDAKEIVSHVKGVHESRLYICDICGMDFKKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCSTCGKRYSSKNLLEEHINTHTGLRPYMCETCGKDFASKYTYKAHAKTHEVRPRPFECTQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSAHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQIQGHLNDTIVVNQPRLTTEDDHVISIPEDDVELLMDETETEQLEETELYVAELKEHVIIQQGGEHIYQEENVLSIPAEEGMEQDEEEEDHHLVVDGQIAFTETEVMQCKPEDCEQQVEEVYSYNTGEDGETIVVPASSDYKEIVGDKKNSVRLVQIRIPSSSAGEARSWLSLVQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414498;
- 90% Identity
- iTF_00058123;
- 80% Identity
- -