Scul014973.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024776.1:110258-117663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 3.8e-05 0.0037 18.1 3.7 1 23 41 64 41 64 0.95 2 27 0.0003 0.029 15.3 3.1 1 23 70 92 70 92 0.98 3 27 0.0039 0.38 11.8 0.8 1 23 98 120 98 120 0.98 4 27 0.00038 0.036 15.0 0.6 1 23 126 148 126 148 0.97 5 27 3.2e-05 0.0031 18.3 2.8 3 23 161 181 159 181 0.96 6 27 1.6e-06 0.00015 22.4 1.0 1 23 190 212 190 212 0.99 7 27 7.5e-06 0.00073 20.3 1.1 1 23 218 240 218 240 0.98 8 27 4.9e-05 0.0047 17.7 4.8 1 23 246 268 246 268 0.97 9 27 8e-06 0.00077 20.2 3.8 1 23 274 296 274 296 0.98 10 27 2.9e-06 0.00028 21.6 1.1 1 22 425 446 425 446 0.96 11 27 9.8e-05 0.0094 16.8 3.2 2 23 482 503 481 503 0.97 12 27 0.0077 0.75 10.8 0.1 2 23 508 529 507 529 0.97 13 27 3.9e-05 0.0038 18.1 0.3 2 23 536 557 535 557 0.97 14 27 7.2e-06 0.0007 20.4 0.3 3 23 565 585 563 585 0.97 15 27 7.9 7.7e+02 1.4 5.6 1 23 594 616 594 616 0.97 16 27 0.031 3 8.9 0.7 2 23 623 643 622 643 0.94 17 27 0.00034 0.033 15.1 2.8 3 23 651 671 650 671 0.98 18 27 0.014 1.4 10.0 2.3 1 23 762 784 762 784 0.98 19 27 3.1e-05 0.003 18.4 0.1 3 23 792 813 791 813 0.96 20 27 1.7e-05 0.0016 19.2 1.2 1 23 819 841 819 841 0.97 21 27 0.12 12 7.1 0.2 1 23 845 867 845 867 0.97 22 27 8.6e-05 0.0083 17.0 2.1 3 23 875 895 873 895 0.97 23 27 6.5e-05 0.0063 17.4 0.1 1 23 901 923 901 923 0.97 24 27 1.1 1.1e+02 4.0 1.1 1 23 929 951 929 951 0.95 25 27 1.4e-06 0.00013 22.6 0.1 3 23 959 979 957 979 0.97 26 27 6.4e-07 6.2e-05 23.7 0.6 1 23 985 1007 985 1007 0.98 27 27 3.4e-07 3.3e-05 24.5 1.3 1 23 1013 1035 1013 1035 0.98
Sequence Information
- Coding Sequence
- ATGGAGTCGAGATATTTTGTTTCGAAACTGTCAATGCTGTCGCAGGGACAGTGCGGCGTCAATGATATGAAGGTAATGTGCGACGAAGATCCTCTCGACCCGATCGACCCGAAGGTAGTGTACGTGTGCGACCATTGCGGTCGGAACTTCACCTCCTCATCGGTGCTGAGGAAGCATCATCTGCAGATGCACGCGGTCGAGAAGAATCACACCTGCGAGACCTGCGGTTACGCCAGTGCCCATCGTCAGAATTTGATAAGCCACCAGAGACGTCACAATCTCGAGTACAAATACCACTGCGAGGTTTGCGGCACGGGATTCTACGCCCGAAACAGTTATCAGGAGCACCAGCTGGTCCACTCAAGGGAGAAGCCGTTCCAGTGCGGAATATGCAACGTAACTTTTCGCTATCGTCAGGGACTGAGGTTGCACGCCAAGCTCCACCAGCCCGACTACGTGCCGCCGCAGAAGAAGCATCTCTGCGAGCTGTGCAACAAGCGTTTTTCACGGAAGCAGGTTCTTCTCGTTCACATGCGCACGCACGGCACCGGCGGTCCACAGAACGAGTACGTTTGTCACATATGCGGCAAGGCCGTGTCAAGCAAGACCTACCTCACCGTTCACGTGAGAAAGCACACCGGCGAGAAGCCGCACGTTTGCGATCTATGCGGCAAGGGTTTCATATCACAAAACTACCTCAGCGTTCACAGACGCACGCACACCGGCGAGCGACCGCACCAGTGCACTCACTGCGAGAAACGATTCACCCAACGTACGACACTGGTCGTACATCTTCGCGGTCACACTGGCGACAGACCATATCCATGCACTTTTTGTCACAAATCATTCGCCTCGAAGACGATGCTCAACAGCCACTTGAAAACCCACGCTAAACAGAATGCGAGAGCGCAGCAAGCCCAGCAGCATCAAACAGATCAGATGCACCAGCAGCAAGACGTCATGCAGCAGAATGAGGAACGCTCACAACCTCTCGAGACTCACGGAAATCTGCGGAATGCCAGGAAGTCGCGTCCATCCTCGAGTTCGAATCGATTGGACGGGAGGAATGAGTTCGACGATAGAGTGTCGGAGGTAGTCGATTGTATAATAAACGCCGAGGTGAAGGTCTGCGAGCGAAGTCTGCAAACGGAGCAGCACCGATGCGACTCCTGCGACGAGTACCACGACTCCGAAGACGCCTTGCTGCTGCACAGGACTGAGCAGGAGATTCGTCGGGTACGGCGGAATATTCGCGAGAGGAAACTGGCAGATTTTTCTTGTCCGTATTGCGGCGAGAAATTCACAAAGAACACGTCGCTTCTGAGACACCAGAGAAAGCGTTGCAGGGAGTACAAGGAAGCCATAAAATTAAATCGGCCTTTCGTGCAGGAAGCCGAGACCGATCAGGCCAGGGACGAAAAACCCAACCCGGCTGGGCCCGTCGAGTGCGACATTTGtcacaaaaaattcaagaagAAGAGATACATCAGAGTCCACATGCGTCTTCACGGATCGCCGAGCGTGTGCGACATATGCGGTGCCGTCCTGGCGTCCGACTGGTGTCTGGAGCAGCACATAAGACGCCACAGAGCCGATTACTCGGTGTATTGCGAGGTGTGCAACAAGggtttttattaccgagcGACGCTGAACGTTCACATGACGACGCACACCAAGGAGAAGACTATAGCCTGCGAGGTCTGCAAGAGAGGATTCGCCAACCGGGTATATCTTCGGAGTCACATGAGGACTCATCTCGACCCGGAGACGAGAAAGAAATTCAAGTGCGAACTGTGCAGCTTCGAGACCTTCTACAGCTACTGCTACAAGGAGCACAGGGACACTCACACCGGCGAGGGAAGGATCGAATGCCAGATATGCGGCAAGTTCATACGACGACAGTACATGAAGACCCACGTAAGAATGCACACCGGCGAGAAACCGGAGATATGCGAGTTCTGCGGAAAAAGATTCCTGTCGAGAAAATACCTGACCAAGCATCGCCGCACCCACACCGGCGAGAGACCTTACAGGTGTGCACCGGTGGACGAAGAGTCGACGAAATTGGAGCCGATCGAGCTCGCCGGAGAGTACGTTATAGGCGCCGAGGAGGATGACGATGAATACACGAAGGAGTATCGGAGCTTCGAAGGCCACGAGGTTGTCACGGAGACACTCGAATACACGGTGGACGTCGAAGATATCAAGGCCAAAACGCGGAAGGAAGAAACGCGGAAACGTACTCGCTGCGGATCGGAGAAACCGGGAAAATTGCAGAAGCAGTACGTCTGTGACACGTGCGGCAAGACAATGAGAAAGAAGCTTCAGTACCTGAAGCATCGTCAGAACCACGAGAGGAAGCCGGGTGGCCCGTGCGATGAGTGCgacaaatttttcgtcgacgaGGAGAAACTCCGAAAGCACATAATCAAGGCTCACCAGGAGGACAAGCCGTTTCCGTGTCTCCTATGCGGCAAGTCCTTCAAGACCGAGGAGTTCCTCAAAACCCATCTTAAGCAgcacaacaaaaaattcgtctGCGACATATGTGGTGTGTCGAAGGTTTCCGGCTACGATCTGAGGCTCCACAAGAAGAAACACAATAAGGAGTACGTTACCCACTGCGAGATATGCAGCAAGGGATTTTACACGAATCAAACTCTGGAGCGTCATCTGCTGACTCACACCGGCGAAAAACCGTTCGCCTGCACGATATGCAACACACCGTATGCAAGCGCCGCGTATCTCAACATGCACATGAAGTCACATGGTCACCGTGAGAAGCACAAATGCAACTTGTGCAGCTTTGAGAGTTACTGGAAGGCCGCTCTCAAGGTGCACCTTAAGATACACAGCGGCGAGAATCAGATAGCTTGCGAGATATGCGGCAAATCGGTCTCGAGTAAGACCTATCTGCAGATACACATGAGGATACACTCTGGCGAGAAGCCCCACGTCTGCGAGATTTGCGGCAAGGCATTCAGCGTCAGAAAATATCTGATCGTTCATCTGAGGACTCATACCGGCGAGCGACCCTATGAGTGCAAGATATGCCAGAAGACATTCACCCAGCAGGGATCTCTGAATTCTCACGTCAAGTCGCACAACGAgatgaaatga
- Protein Sequence
- MESRYFVSKLSMLSQGQCGVNDMKVMCDEDPLDPIDPKVVYVCDHCGRNFTSSSVLRKHHLQMHAVEKNHTCETCGYASAHRQNLISHQRRHNLEYKYHCEVCGTGFYARNSYQEHQLVHSREKPFQCGICNVTFRYRQGLRLHAKLHQPDYVPPQKKHLCELCNKRFSRKQVLLVHMRTHGTGGPQNEYVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGERPHQCTHCEKRFTQRTTLVVHLRGHTGDRPYPCTFCHKSFASKTMLNSHLKTHAKQNARAQQAQQHQTDQMHQQQDVMQQNEERSQPLETHGNLRNARKSRPSSSSNRLDGRNEFDDRVSEVVDCIINAEVKVCERSLQTEQHRCDSCDEYHDSEDALLLHRTEQEIRRVRRNIRERKLADFSCPYCGEKFTKNTSLLRHQRKRCREYKEAIKLNRPFVQEAETDQARDEKPNPAGPVECDICHKKFKKKRYIRVHMRLHGSPSVCDICGAVLASDWCLEQHIRRHRADYSVYCEVCNKGFYYRATLNVHMTTHTKEKTIACEVCKRGFANRVYLRSHMRTHLDPETRKKFKCELCSFETFYSYCYKEHRDTHTGEGRIECQICGKFIRRQYMKTHVRMHTGEKPEICEFCGKRFLSRKYLTKHRRTHTGERPYRCAPVDEESTKLEPIELAGEYVIGAEEDDDEYTKEYRSFEGHEVVTETLEYTVDVEDIKAKTRKEETRKRTRCGSEKPGKLQKQYVCDTCGKTMRKKLQYLKHRQNHERKPGGPCDECDKFFVDEEKLRKHIIKAHQEDKPFPCLLCGKSFKTEEFLKTHLKQHNKKFVCDICGVSKVSGYDLRLHKKKHNKEYVTHCEICSKGFYTNQTLERHLLTHTGEKPFACTICNTPYASAAYLNMHMKSHGHREKHKCNLCSFESYWKAALKVHLKIHSGENQIACEICGKSVSSKTYLQIHMRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKICQKTFTQQGSLNSHVKSHNEMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -