Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_964017025.1
Location
OZ024780.1:15299477-15302176[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 1.2 1.4e+03 -0.1 0.0 3 18 163 178 161 179 0.89
2 6 5 5.9e+03 -2.1 0.0 22 43 229 252 226 255 0.79
3 6 1.9e-10 2.2e-07 31.3 0.5 3 44 263 306 261 308 0.94
4 6 3.1e-08 3.6e-05 24.2 0.0 2 43 316 361 315 363 0.96
5 6 1.6e-12 1.9e-09 37.9 0.0 1 44 370 414 370 416 0.94
6 6 8.9e-13 1e-09 38.8 0.1 1 41 423 463 423 466 0.98

Sequence Information

Coding Sequence
ATGAGCGACACCGAGGACGACAGTGAGCTTCTCGACGAGATAAGAGCCCTCGAGGACGTCCTCGCGAAGGACGAATGTTCGACGTCCTCGAACGTCCGCAAGGACGTTTCGACGCCCAACCTAGCCTCGCGCCGGACGAGCGTTCCGTCGAGAGGATTCGGCGAAGTGACTCCGCACCGGGAGGCCGTAAACGTCGTCGACAACTCTCGCACCGCTTACGAAACTAACAAAATGCTCATCGAGCTCCTTCAGGAAACGAAGATCGAGCTATTGGCGATACtggaaaaatgtatcgaaaaCAAATCCGTAGTGACAGAAAAAATTCGTCTAACTGCGAGTAACAATCGGAGCTCGAAAGTTTTTATCGCCACTGCGGGAATGCCTTACTTCAAAACCTCACGTAATTTTTCAGCTCCGTGCAACAAAGACGCGATGACCAAGGCGAGGAAGGGCGAGCTCCAGTACATTCAGCTTCGCTACACGTGTCCCTGGACGGCGAAGGACAGGAACATTCTCTGGAAGGCGATTCGCCAGGAGGCGTCTGCCGCGGTTCTGGAAACGGAGCGCGAAGACGGAGCATCCAGGCGTTCGGAGAGCCACGATCCAGGCTCCGGCAGATCCGGGACCTTGAATCTACCCAAGAACTTCAAGGCCATGATCGGTCCGCTCGACGACAGAGAATTCGATTGGATGAAGATAGCGGCTTCGGATTTTGAGAGCAGGCACACCTCGGACGAGTGCAGAGTAATGTGGAGAGTTTTTCTCCATCCCGACATAAACAGGTACCGATGGACCAAGGACGAGGACTCGAAGATCGAGAGTCTGAGCAAAAAGTACAAGCGTCAGGATTGGGAGAGTCTGGCGAAGGAGTTGGGGACGCAGAGGAGCGGCTACCAGTGCTTCATAAGATTCAACACGAACAACCGAGCAATGTCCGCGAACGAGCGGCCGTGGACGGACGAGGAGGACGCGAGACTGGCGATGTGCATAAACAGGTTCAAAATCGGAAACTACGTGCCGTGGGGCACGGTGGCGATATACATGGACGGAAGGAACAAGAGTCAGGTGTACTTTCGTTGGACCTACAACGCCGCGCCGCACCTGAAGAAAGGCAGATTCACGAAGGAGGAGGACGCGACGTTGATGGACGCGGTGGCGAAGTACGGAAAAAATTTCAGCAGGATATCGGAGCACATAATGCCTGAGAGATCGAGCGCGCAGCTGAACGATCATTACCTGAGGCTCGTTCAGCGGAAAAAGGGCGTGAGACAGTCGTGGAGCATCGACGAGGACGCGAAGTTGCTCAGGCTGTTCGGAGAGCACGGACCTAATTGGTCGAACATAGCGCTGGAATTTCCGGGAAGAAACAGGACTCAGGTGCGTCACCGTCACGCATCGATCATTCGCTATTGGGACAAGGGCGTTTCGTTGTTCGACATCCCGCGCGAATACGGGAGGGTGGACGAGGAAGCGTCCGGCGATACCGACGTGATCGGTCGACTTGAGCGGCAGAGGATGGAGCAGCTTACGGCGAAGAAACGCTCGAAGATGCAGCAAGTCGATCTTGAGCTGGCCAAGTTTTTTGAGCTTCCACCGCCGGTATCGAAATCCGGACGGAAAGCTAAGTATTACAGGGAGCAGGAACTCGAGAAGGTCACGCGAAATTTGTACTTTCTATTGAAGACGTTGAAGGCCGATCTCGTTATTCCCGATGCGCCGGAGCACAGGTTTCTTACTGAAAAAGATAAGCAGTTGTTGAAATCGTTGGATTATCTGCACTTAGAGTCCGAGTGCCCGGAACGCCGGGCGACCGCTGTTGAAGGCGCAAGAACGAACATCTGCGGTACGCGAAGGGTCGAGGATGACGGGGAGAGACATTTTGCACCGTTGTGTTCCGGAAACTGCAATCGGATGGTGAAAATAAGACTGAATGACTCGATAGACTATCAGGACAAGCGGCAATTCGATGACTGCCGAATAAAATTGGATATGGAATGCCACACACCGACGGACGTCAGCGACGTTGTcggtgaagataaaaattacgaGTTCGATAAACTCATGAGAATCTTTGAgacgcaaaatattttgtcgcGTGAACGAGATGTCGTTCGACAAATGTATGCGTCCCGGTCCAGAGAACTCTCGACGAATTCGTCCGATGTTGCAGCGGCGCGTTTGCCGCACGATTCTCGAAGTCATAAGCGTGGCCGGCAAGAGAAAAACAGTCCGAGGAAGAACAGGAAGGAAGTCACGCTGTGGGACTGCACCATCACCGAAGGAATAATTCGTGAGCGGGACCGGTTCACTAGCTGCGTAGAACCAAATTATCATACACTGCTCGGCTTGCAGCATATTATTTCAAAGAAATTGGAGGAAAAATCTTCTTCGAATTCGAAGACTTTTGGATCAGACCTACCGATAAGCGAGAGGGGCGCCAGATCGCTGGAAACTCTGAAAAGACGACTGGTACAGTTGTTCAAATATCCTATCGGCTTGTCGCACATTGTTCGACCGGAAACGTACCCCGAAAATATCCGGAGAGACACACCGTTCGATAACGGCACGAACCTGGTCGAAGACTCCGAGGAAATCCCAGATGCGTCGTCGTCTGAAATTAAGAGAAGACGATTTACGGCTACGATTGAAATGCCGATGGGTTCGAAAAATCGTCGCGGTGGCCGAAGGGGAAAAGGATAA
Protein Sequence
MSDTEDDSELLDEIRALEDVLAKDECSTSSNVRKDVSTPNLASRRTSVPSRGFGEVTPHREAVNVVDNSRTAYETNKMLIELLQETKIELLAILEKCIENKSVVTEKIRLTASNNRSSKVFIATAGMPYFKTSRNFSAPCNKDAMTKARKGELQYIQLRYTCPWTAKDRNILWKAIRQEASAAVLETEREDGASRRSESHDPGSGRSGTLNLPKNFKAMIGPLDDREFDWMKIAASDFESRHTSDECRVMWRVFLHPDINRYRWTKDEDSKIESLSKKYKRQDWESLAKELGTQRSGYQCFIRFNTNNRAMSANERPWTDEEDARLAMCINRFKIGNYVPWGTVAIYMDGRNKSQVYFRWTYNAAPHLKKGRFTKEEDATLMDAVAKYGKNFSRISEHIMPERSSAQLNDHYLRLVQRKKGVRQSWSIDEDAKLLRLFGEHGPNWSNIALEFPGRNRTQVRHRHASIIRYWDKGVSLFDIPREYGRVDEEASGDTDVIGRLERQRMEQLTAKKRSKMQQVDLELAKFFELPPPVSKSGRKAKYYREQELEKVTRNLYFLLKTLKADLVIPDAPEHRFLTEKDKQLLKSLDYLHLESECPERRATAVEGARTNICGTRRVEDDGERHFAPLCSGNCNRMVKIRLNDSIDYQDKRQFDDCRIKLDMECHTPTDVSDVVGEDKNYEFDKLMRIFETQNILSRERDVVRQMYASRSRELSTNSSDVAAARLPHDSRSHKRGRQEKNSPRKNRKEVTLWDCTITEGIIRERDRFTSCVEPNYHTLLGLQHIISKKLEEKSSSNSKTFGSDLPISERGARSLETLKRRLVQLFKYPIGLSHIVRPETYPENIRRDTPFDNGTNLVEDSEEIPDASSSEIKRRRFTATIEMPMGSKNRRGGRRGKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-