Snig006421.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- nfxl1
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010002633.1:152955-156190[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 1.9e+04 -8.1 6.4 15 19 164 168 163 168 0.82 2 19 0.13 1.3e+03 -0.3 0.4 4 10 199 205 198 205 0.95 3 19 6.6e-08 0.00063 19.8 15.5 1 18 213 229 213 230 0.98 4 19 0.82 7.9e+03 -2.9 0.5 5 10 255 260 255 260 0.90 5 19 8.7e-06 0.084 13.0 15.2 1 19 266 285 266 285 0.95 6 19 0.24 2.4e+03 -1.2 1.9 5 10 309 314 309 314 0.95 7 19 1.9e-09 1.9e-05 24.7 13.0 1 19 320 338 320 338 0.99 8 19 0.9 8.7e+03 -3.0 0.5 1 7 363 368 362 370 0.49 9 19 8.1e-08 0.00078 19.5 10.0 1 18 373 390 373 391 0.97 10 19 0.71 6.8e+03 -2.7 0.4 1 5 400 404 400 409 0.73 11 19 3.9e-07 0.0038 17.3 17.6 1 18 425 442 425 443 0.97 12 19 3.1e-08 0.0003 20.8 14.6 1 19 452 470 446 470 0.90 13 19 0.00079 7.6 6.8 9.6 8 18 514 524 506 525 0.82 14 19 0.022 2.1e+02 2.2 4.4 1 11 537 546 537 547 0.95 15 19 0.87 8.4e+03 -3.0 1.4 6 10 598 602 597 602 0.88 16 19 1.1e-05 0.11 12.7 6.9 1 11 608 618 608 619 0.96 17 19 0.0049 47 4.2 13.9 3 18 648 663 647 664 0.93 18 19 0.2 1.9e+03 -0.9 0.2 3 8 679 684 673 685 0.68 19 19 4.3e-07 0.0041 17.2 9.7 1 16 715 729 715 735 0.92
Sequence Information
- Coding Sequence
- ATGTCGGAGATAAATACGAATTTCAGAAATATAAATAGCAATGGGGAATCAAACAGGTTTGCAGAGGCGCATGCTAAAAACATTGCTGCAGCTCAACGAATAGTAGAAAACATTTCGGCTTCTAGTTCCGAAGATGAGGGAGATCTCGATGAGAAGAGCATATTGAATTCTTTATATCAGCATTATCAGGTATCGACCGATGGCAGTAACCAGCTTGCACGCACCACTGCATTTTTGGAGAACACGCTGCACTCTGGCGCTGCAACTTGTCTAATTTGCATTGGAAGTATCCGACGCAATAATGCCATTTGGTCGTGCAGAGATTGCTTTTGCCTATTTCATCTTGATTGCGTTCGGCGTTGGGCGAACGATAGCCTTATGCAGCTGAAGGTTCGCACCGccgaacaacaaacacaatccGCGACAGGTTACTACAATAACTTGGGCGAATATGTGGCACCAAAGCGAGTTCGTTCGCTATATTGGTGTTGTCCGCAATGTCGCAAAGAATTCGAACCAAATGAAAAGCCAACACAATACAAATGCTTTTGTGGCAAGGAAAATAACCCCCAGCCCCAACCATTCTTAGTGCCGCATTCTTGTGGAGAAATTTGCGGGAAAATGCTGAACCCTTACTGCGGTCACGATTGCAAACTGCTCTGCCATCCGGGACCTTGTCCACCTTgtgcacaaaacaaattggCTTCTTGTCTTTGTGGAAAGTCAGCACCGAAGTATGTAcgatgtgcaaataaaatttttacttgcGGAGAATTGTGTGGTGAACTACTTCCCTGTGGAGAACATAAGTGTAAGCAGAAATGCCATTCTCGCAATCAGTGTCCACCGTGTAGCAGCTCTAGCATGCAGGCCTGCAATTGTGGACAAGAAGTAAAAAAACGGAACTGTTCTGATTTGAGGTGGAAGTGCCAAAAGGTGTGTGGAGCAAAGTACTCCTGTGGTATACATGATTGTAAGAAAGTCTGTCATTCAGGTGATTGTGGCGAATGTCCTTTAGGTTTACCGCGCACATGTCCATGCGGCAAATCAcaTTTCGTAGGTTCCTGTTCACAGGCTGTTGAAACATGTGGTGATACATGTCAGAAATTACTACCTTGTGGGCTACATTACTGTTCGCAACGATGCCATCGGGGCAATTGCAATAAGTGCTTAGTCATAATTAAGAAGAAGTGCCGTTGCGGCTTACATGAAAAGGAATTACCCTGTTCGAAAGAATTTTCCTGCGGCATGAAATGTAAGCAACTACGTGAATGCGGAAAACATGCGTGCAACAAGAAGtGTTGCGATGGTCAGTGCCCACCTTGCGAAAAAATTTGTGGAAAGCAACTAACTTGCAATAAGCACAAGTGTCAGTCGGTGTGTCACAATGGGCCTTGTTATCCTTGCAGGCAACAGTCTCAGATTAATTGTCGGTGTGGGAAAACTCACAAAACAGTACCATGTGGACGAGAACGAAATATTCGTATTGTTTGCATGGAACGTTGTCGAATCAACTCAAAATGTCATCACACTAACATACATCGTTGTCACAAAGGGGATTGTGCTCCTTGTTTGCAGAAATGCGGCCTAATAAACACAACTAGTAATTGTGGACATGTTTGTATGGTCAGATGTCATGCAGCAGTCCGACAGATTGAAATGCAAGGGCTCAAAAAGGTGACTACTTTTAAAGTTTTACCACATCCAAGGTGCGAGGAGAAGGTTCCTGTTACATGCATTGGTGGTCATGAAATCGTTGATGAACCATGTTGGAATTCACTACCAAAGTCTTGCCAAAGGAAATGCAACCGCAAACTCTTATGCGGAAGGCACACTTGTCAATTAATTTGCCACCAAGTGCCAGACATAAAGAATATGCAGcaacaaattgGGTGTGCTGGTTGCGAACTAGGATGCGATTTACCTCGGCCGCCCGGCTGCACACATCCATGTACACGAGCGTGTCACTTGCCCCCATGCCAACCATGTATTTCGACGGTTAAGGTCAAATGCCATTGTGGATTGACACAAGTAGTTCATAAATGCAgtgaatattttgcaaacttGGACAGCCCGGAGGCAGTTCAACAGCATCAGGAGCACTTAAAGAGTTGCGGAAATCGTTGCTTAAAAAATtatGCATGCGGACATCGGTGTATTGCAATCTGTCACGATGGTAAATGTCCAAATCCGGAATTGTGTCGTAAAAAGgtgaaaatttattgctcTTGCAAACGCTTGAAAATTGAAGTTTCTTGCGACAAGCATCGTTCTGGTCAAACTTCATTAGATTGTGACGCATTGTGTTTCGAAACTAATGCAAAATTTGCACAAGATCAGCAAAATCAGTTGGAACAATTGCAACGAGACGAGGCTCTCAAGAATCAATTAGAGTTAGAACAATACGAGAAAAAATTTGGCAAACGTAAACACCGAAAACGTAAAGTTCAAACGGAACCAGAAACaccaaaaactaatttaaaactGTTAGCCATATGCGTAGCCGCTGCTTCTGTGTTATTCGTGTCTATGACTGTTGCTTTctttgcaacaaaataa
- Protein Sequence
- MSEINTNFRNINSNGESNRFAEAHAKNIAAAQRIVENISASSSEDEGDLDEKSILNSLYQHYQVSTDGSNQLARTTAFLENTLHSGAATCLICIGSIRRNNAIWSCRDCFCLFHLDCVRRWANDSLMQLKVRTAEQQTQSATGYYNNLGEYVAPKRVRSLYWCCPQCRKEFEPNEKPTQYKCFCGKENNPQPQPFLVPHSCGEICGKMLNPYCGHDCKLLCHPGPCPPCAQNKLASCLCGKSAPKYVRCANKIFTCGELCGELLPCGEHKCKQKCHSRNQCPPCSSSSMQACNCGQEVKKRNCSDLRWKCQKVCGAKYSCGIHDCKKVCHSGDCGECPLGLPRTCPCGKSHFVGSCSQAVETCGDTCQKLLPCGLHYCSQRCHRGNCNKCLVIIKKKCRCGLHEKELPCSKEFSCGMKCKQLRECGKHACNKKCCDGQCPPCEKICGKQLTCNKHKCQSVCHNGPCYPCRQQSQINCRCGKTHKTVPCGRERNIRIVCMERCRINSKCHHTNIHRCHKGDCAPCLQKCGLINTTSNCGHVCMVRCHAAVRQIEMQGLKKVTTFKVLPHPRCEEKVPVTCIGGHEIVDEPCWNSLPKSCQRKCNRKLLCGRHTCQLICHQVPDIKNMQQQIGCAGCELGCDLPRPPGCTHPCTRACHLPPCQPCISTVKVKCHCGLTQVVHKCSEYFANLDSPEAVQQHQEHLKSCGNRCLKNYACGHRCIAICHDGKCPNPELCRKKVKIYCSCKRLKIEVSCDKHRSGQTSLDCDALCFETNAKFAQDQQNQLEQLQRDEALKNQLELEQYEKKFGKRKHRKRKVQTEPETPKTNLKLLAICVAAASVLFVSMTVAFFATK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -