Snig016768.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005365.1:879891-883857[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.17 14 6.5 0.1 1 23 117 140 117 141 0.95 2 15 0.13 10 6.9 4.7 2 23 189 211 185 211 0.92 3 15 0.36 29 5.5 0.3 1 23 349 372 349 372 0.92 4 15 0.0067 0.54 10.9 2.9 2 23 421 443 420 444 0.95 5 15 0.001 0.083 13.5 1.0 1 23 508 531 508 531 0.95 6 15 1.6 1.3e+02 3.4 0.0 2 14 550 562 549 574 0.85 7 15 0.00016 0.013 16.1 2.3 2 23 582 604 582 604 0.97 8 15 0.00064 0.052 14.1 1.0 1 23 693 716 693 716 0.95 9 15 0.00026 0.021 15.3 0.5 1 23 771 794 771 794 0.96 10 15 0.0029 0.23 12.1 3.7 2 23 844 866 843 866 0.97 11 15 0.0011 0.086 13.4 1.3 1 23 941 964 941 964 0.92 12 15 0.048 3.9 8.2 1.9 1 22 1016 1037 1016 1041 0.94 13 15 0.00017 0.014 15.9 0.1 3 23 1131 1152 1129 1152 0.97 14 15 3.5 2.9e+02 2.4 0.1 1 8 1173 1180 1173 1193 0.90 15 15 1.1 91 3.9 1.0 2 23 1205 1228 1204 1228 0.89
Sequence Information
- Coding Sequence
- ATGGATCTTTGGAATATGTTTTCCACCGATTTTGCCGAAAGCGATGCGTCCAATCTAAATGAAAATATCAACAATGATGCTAATAATAGGCTGGTCAAACAAGAGGTGCTGGACGacgaggaggaggaggaagaTGGTGATAATGATGACGAAGAGGATATGGGCGAGCATGAACTGGGCAAGGAAAATCCAAATGACGatgttatatttaatttcgatttaaagcccattattaaaaaagatgATGCACAAAGTCGCGTAATGCGTGATTTTCCTAGAACAACACCATCACAAATAAATGCGACCGATGAAAATGGCGTGTTGATTAACTATGAACTTGGTGTCATTTACATTTGTCCGGCATGCGGTGACGAATATGCTGCTCAGGATCAATGGAAGGCTCATATGAATCAGTTACATCATTACAATACACGACGCGGTTTGAATTTTGTGAGAGTTGACAAGTTGTATCATCAATGTTTGGAATGCCGGAAACACATAGCAATGCACAGCATGGAGAACTTGCTCAAGCATAAGTTCACGCATTTGCCGCATCGTTGCACCAAGTGTTCCATTTGCATGCGTCAGTATAAATATCGTCAGGACTTAATGGTGCATCTGCGCATGTTGCACCGTGATGATGTAGTACAAATGATGCGCGAGGGTATGGGCAATGCTGTGGGTGCCACATCTACGCGTCATCATCCAACATCAAAGTATTATAGCGGCAGTGTCGGTGGTAGTCGGTTGTCCATTACGGATGTCAAAGCAAATGCAGTTGAAATGTTTAGTACGGATGATGCCATCGAGGTCAGGAATGAGCCTGAGTTGGACGCAGAGAACGTGGATGATACTGGTAATGCATATGCTTTACGCTCCTTTCTCGACGACGAAGCAAGTCGCAGTTCTTCACAGATATCAGCTAAACGAGTTGCTACTGGCGATAATGGCGTCGTAAACGATCCCAGTGTCGCAGAGCCTGGTGTTGGCGGCAACGCTGGTGCAACAGATAGTAAAGATGAAGTCTGCGAGGATTACATACACTACATTTGCCCGCAATGCAGTCAAGAGTGCGAGACGCTACCACAGTGGAGTCAGCATATCGAGTTTGTGCATGATTTTGTTAGCAGGCGTGGATTAAATTTTAAGACAATTGGCAGTCAAGCACAATGCCAGGAGTGCAATAAGCTTATCGAGCCAAGTTATATAAAATCGTTGCAACTGCACAAGTTTAGTCATTTGCCAAGTAGCGAGTGGATGCGTTGCAAATTGTGCTACAAGGGTTTCAGTGACCGCAAGGATATACAACAGCATTTGCTCAAGCAGCACCATTTGGACACGTTAGTGGGTTCAACGGAAGATGATCGTAGCCAACCGGCATTCGAGTCCATGGGCGTCGATGGTGGCAGTAACTTGGGTGACGATGACCAATTGCTCGAAATGACGGTGTCAAGCGGATTTGTAGGCATGTCACGCGGTCGTGGAGTAGCAGCGGACGATAAATATGAACCGCATATTGACTACCTATGTCCGCAATGTGGCACAGTGTTCTTCATGAAGAAATCCTGGCGCAAGCATGTCATGAAAACACATCGCATGAATGATCTGagcacattaaattttaagtatcTCAATGATCGGCAGCTGCAATGTAACGAATGCGACAAGATTATAACAAACGCTTACGGCATACAAAATGCACAGCAACATCGCATTACGCATTTGCCGTATAAAGCATTTGCACGATGTCGCATATGTCATAAATCGTACACCGATCGTAAGGGTTTGGTAAAGCATATAGCCACACGGCATCGAATTGGCGTCGAGGGTAACGTTTCCAAAATAGGAAACAGTGGGCAAGGCAGTTTGTATGAATCGGTGCCACGTACGCAAAAAATGTCGGAACCACGTAAAGAGATTGTGACAGTGAAAAATCAAACCTATGAGATCGTCTTtcttgatgacgatgatgaagcCGTTTGCACAGCTGCTGACGATAATATCGACGATGTAGTCCACAATGATAGCGCGCTTGGTTCCAATGCCGATGTCACAGGCTATGGGCGTTCATCGCGTTTTAAATGCGTTGACTGTGGTTCTCTATTTCCCTCACAACACACactaaaaaaacacattagtGAGGAGCATGAATTTCTAGACTATCAAAAGGATACAATGGCACCGAAGGATGAGCGTCCGAGCACCCCACCAACAAAACTTTTGCGTTCTCTGCTTAAAGATAATGAAACCGACGCCGTTGTACCTGCAACTGTGCCAAGCAGCAATTCGGCTGTTGAAcgccattttatttatatgtgccCGTCTTGTGGCAAGGAATACATGACCCAGTTCGATTGGCGGCGGcacataaacgaaaaacacaaTTTCGATAAGCGCGTCTATTTGAATATGAGACAGATAGATAAATGCCGTTACCAGTGCACACAATGCAAGGATATCGTATGCAATCCAAAGCTCAAGGGCCTCCAGGATCATCACTTCCGACACTTACCGTATCGTTTGTACTTAAAGTGTCTTGTCTGTGGCACGTGTTACAATCACAAACCGAACATTATGAGCCACTTGCGCACGCGCCACAATATTTGTGAGGAAGCTGTCGATGGCGTTGATCCGATCACAACATCCACATTAAACACAACGCAACAGACAAAGGTGCCATATGACGCCATACCGTCAATGGGAGCGAAATTAAATAAGCCTCGCATGCTGGACAACACCGTATCCATAAGACCGGCGGGCTTAAACACCATTGAGGACAACATCTCGTATCATAATGCGGTTGATCTGGACTTCATTACATACTACTGTCCCAAGTGTAATAAGAATTTCGACTCACATGCCTTCTGGCGTAAGCACATCGTCGAAGCACACAACTACAATAGTCGCGAAGGTCTCAACTTTCGGCAGATTGATAATCATCATTACTTGTGCTTGGAGTGCTACAAGCGCGTTActgtcacacacacaaaaggaGCCATTGGGCAGCTACAGTCGCACAAGTTCCGCCACTTACCCTATCGTTCGTTCAAATGTCTTAACTGCAATGGTGAATTCGTGCGTAAGCAAATGTTCTTCAAACATTTGAATAGGGAAACAAATCATTGtgacaacaaagcaatcacTGATACATCAAACATGATTCTCAATGACGAAGATGATAATGAGAATAAGATTAACGAGAAAACAGAGGCCGACAATACCGAAGTTGTTACGCAAGTACAAACAGAAGATAATAAGCCAAATGCGGTCGAGGGACAAGATGTAGACTTAACCGATGCCGATAATGATGACAATGACATCGAGGAGGATGAGGAGATGCATGCGATTAGTGATACCTCGCCAATCGATCCAACGTGCTATACACTTTTATGTCCACAATGTGGTGTAGAATTCGATACAAATAGCAATTGGCGCGaacacataaatattaaacattcGCTGGGCAAGCGGAAATCTCTTAATCTGACCAGATTAGAGAACAGCACTGAGCATTGCTACCAGTGTCACGTCTGCGATGAGAACATACTTACCAGTAAATTGCATCTGTTGCAATTGCATTGCTTtaagcatttgccatttggcgCCTACATACGCTGTCAGTTGTGTAGCGTGGCAAGCTTTAGCACTATGCACGACCTACAGGATCATCTAAGTCAACGTCATCCGCACACCGAGCATATGCAACCGGAATTGGGCATTAGTAATAACTACGATGACGGCGATAACAGCAATAGCCACCAATATTTACCCATACCGCCACACATGCTGGACGATGACATCGACTTTGATGATCAATATCTTTTGGGTTAA
- Protein Sequence
- MDLWNMFSTDFAESDASNLNENINNDANNRLVKQEVLDDEEEEEDGDNDDEEDMGEHELGKENPNDDVIFNFDLKPIIKKDDAQSRVMRDFPRTTPSQINATDENGVLINYELGVIYICPACGDEYAAQDQWKAHMNQLHHYNTRRGLNFVRVDKLYHQCLECRKHIAMHSMENLLKHKFTHLPHRCTKCSICMRQYKYRQDLMVHLRMLHRDDVVQMMREGMGNAVGATSTRHHPTSKYYSGSVGGSRLSITDVKANAVEMFSTDDAIEVRNEPELDAENVDDTGNAYALRSFLDDEASRSSSQISAKRVATGDNGVVNDPSVAEPGVGGNAGATDSKDEVCEDYIHYICPQCSQECETLPQWSQHIEFVHDFVSRRGLNFKTIGSQAQCQECNKLIEPSYIKSLQLHKFSHLPSSEWMRCKLCYKGFSDRKDIQQHLLKQHHLDTLVGSTEDDRSQPAFESMGVDGGSNLGDDDQLLEMTVSSGFVGMSRGRGVAADDKYEPHIDYLCPQCGTVFFMKKSWRKHVMKTHRMNDLSTLNFKYLNDRQLQCNECDKIITNAYGIQNAQQHRITHLPYKAFARCRICHKSYTDRKGLVKHIATRHRIGVEGNVSKIGNSGQGSLYESVPRTQKMSEPRKEIVTVKNQTYEIVFLDDDDEAVCTAADDNIDDVVHNDSALGSNADVTGYGRSSRFKCVDCGSLFPSQHTLKKHISEEHEFLDYQKDTMAPKDERPSTPPTKLLRSLLKDNETDAVVPATVPSSNSAVERHFIYMCPSCGKEYMTQFDWRRHINEKHNFDKRVYLNMRQIDKCRYQCTQCKDIVCNPKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIMSHLRTRHNICEEAVDGVDPITTSTLNTTQQTKVPYDAIPSMGAKLNKPRMLDNTVSIRPAGLNTIEDNISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEAHNYNSREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLNCNGEFVRKQMFFKHLNRETNHCDNKAITDTSNMILNDEDDNENKINEKTEADNTEVVTQVQTEDNKPNAVEGQDVDLTDADNDDNDIEEDEEMHAISDTSPIDPTCYTLLCPQCGVEFDTNSNWREHINIKHSLGKRKSLNLTRLENSTEHCYQCHVCDENILTSKLHLLQLHCFKHLPFGAYIRCQLCSVASFSTMHDLQDHLSQRHPHTEHMQPELGISNNYDDGDNSNSHQYLPIPPHMLDDDIDFDDQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -