Basic Information

Insect: Stegana nigrithorax
Gene Symbol: -
Assembly: GCA_037044495.1
Location: JBAMBQ010003204.1:114748-116966[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.5e-06 0.00029 21.2 0.6 1 23 382 404 382 404 0.98

2 7 0.00011 0.0086 16.6 2.4 3 23 412 432 410 432 0.98

3 7 1.7e-05 0.0014 19.1 3.2 1 23 541 563 541 563 0.97

4 7 1e-05 0.00082 19.8 2.8 1 23 569 591 569 591 0.98

5 7 0.0055 0.45 11.2 1.8 1 23 597 619 597 619 0.99

6 7 0.0024 0.19 12.3 0.5 2 23 655 676 654 676 0.96

7 7 0.00011 0.0087 16.6 0.1 1 23 684 707 684 707 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.5e-06	0.00029	21.2	0.6	1	23	382	404	382	404	0.98
2	7	0.00011	0.0086	16.6	2.4	3	23	412	432	410	432	0.98
3	7	1.7e-05	0.0014	19.1	3.2	1	23	541	563	541	563	0.97
4	7	1e-05	0.00082	19.8	2.8	1	23	569	591	569	591	0.98
5	7	0.0055	0.45	11.2	1.8	1	23	597	619	597	619	0.99
6	7	0.0024	0.19	12.3	0.5	2	23	655	676	654	676	0.96
7	7	0.00011	0.0087	16.6	0.1	1	23	684	707	684	707	0.98

Sequence Information

Coding Sequence: ATGGACAGAGTACTTCTGAAATTGAAATACCCCACTACAACAAGAGGCGGTGCAACCATCAGACTAGTCGACCAGTTGTCCGTGCAGCCGCAAAAAATATCATCGCAACTTTCTTCCACATCATGCATGCAATGCTGTGCGGATCTTTCTTCGCAAACTGTTGACAATATTTGCAAAGGTGTCACAGGGGCGACCGCGAATTTGAGCGCAGCAGTCGATGTTGGCGCCGCATGTACAAGTCTCGTTTGTAATGATTTTAATGCTTCAACGGCTGCCTGCTGTGTTGGACGCAATGGTATTTGCACAGTGTCTCCGTTGCCACCCCCTCCGCCGCTTTATTGCAGCGCCCCAGAGTGCAGAAGCAGTACGCTACCCCCTGCATCGGCGCCTCCTCCTCCGCCTCCTTCGTTAACGCCAATTGttaacaaaagcgaaaatgaCTACGCGCAGCAACACAGAAATGCTATCGCAGAAGACCTAGATTGGTCGGCTGAACGTTACGTGGAACGTTACGAAGAACCTGCAgagaattttatttctatCGACGATGCGAAAATTGAGCAAATACTTTTACGCATAGGACGAGAACAACAGCTTCTAGCACAGCAAACTGCGAAGGCCAAAACAGCATCAAATTTGCAacatgaaattattaatttaattgatgacgatgacgataattatgatgatgatgatgaaattAAGCAACACAATAAAGAATTTACGGTGGAGTTGCAGAAAGAAATGAAGActaaagacaaaaagaaaaaaagaaatccgaGAATTTCACCAGATATATGTCTTATACCGAAACTACCAGATCCAACTGTTCCTCAGAGAATAGTAGCTCAGATTGACCTTGTGGACAGTAGCGACTCAGAACAGAACGATGATCAACGACGTTGTTTCAACGACGAAGAGTTGCCGTTGGCAGCAACCTCAGTAAGCTGTGAGTTAGACTTGGACGATGAAAACGAGAATTTCGAAATGCGAAATGCGTCTACTGAAAATCAAGCTAAGAATAAAGCTACCAGGAACACAAATCCGGATTCCGACCAGGAAGAAGACGTATACGACATCGTGGACGGATACACGCCTGACTTGCGATGGAAAGAGGTTACCGATCATAAATCACGAAACTTATACGAATGTTTGCTATGTGGCAAGAAGGTTCAGTCCAACTACAATCTGCGTCGGCACATGATGATACACACAGGCGAACGTCCCTTCGGCTGTGATTTGTGCGACAGGCGATTTCGCGAGTTTAGCGATCTtaaaaaacatagaaaacgACATGCCAGTGAGACAGAGTTTATTTGTATGATTTGCCATAAAAATCGACCCGCCGATCATGATTCGATTCGTTGTAGTAAATGTGAAAGCAAGAACCTCGTACTAAAACCCCAAACAGAGGCGATCACAGCCACAAAAATGGCACAGACAATGCCGAAGATCAGACGCCAATCACCGAAATTGCATGAATCTGCACCGAAGCAAACTGCACCTGTCCGAATTTCCACACCGATGGAAAGCACAACGAATGAATCCAATTTGTCGGAAACTCTTGATATGCTAGACACAATCTCAAGCACCACTAAGCGAGGTCGAAGACATCGAGCATTTGAGTGCCCCCTCTGCCAGCGTAAATTCGGCACGCGGCACAATCTGAAACGTCACTTTATGATACACACCGGCGAGAAGCCATTTAGCTGCAACAAATGCCGCAAACCATTTCGGGAATATTCAACGCTCAAGAAACATATGGTCACGCACCAACGTGATCGTTGGTACAAGTGTCTGCGTTGCCCGCAGAAGTACCGCGACTACTTGGAGTACATGGCCCATAAAAGAACACATGGCGATTTGGAAGATTCATTGGACCCGAATTGCAAACAAACTTCGAATTACGACTTTAATGACTCTAACGATGACGAACAACTTTCCTCGCCAGACAATTGGCTCGAATGTTGTGAGTGTGGCGATCGCTTCACTGATATTGATGCATTCACGGTACATATAAGACAACACGATCCTCAAATTTGTTATCAATACGAGTGTTACATATGTGAGGAGAATTTTGAAGAGCGGGATGCACTAGAGGCGCACATGAGTACGCAGCACAAGATCGATTGTAAAAAGCAAGATTAG
Protein Sequence: MDRVLLKLKYPTTTRGGATIRLVDQLSVQPQKISSQLSSTSCMQCCADLSSQTVDNICKGVTGATANLSAAVDVGAACTSLVCNDFNASTAACCVGRNGICTVSPLPPPPPLYCSAPECRSSTLPPASAPPPPPPSLTPIVNKSENDYAQQHRNAIAEDLDWSAERYVERYEEPAENFISIDDAKIEQILLRIGREQQLLAQQTAKAKTASNLQHEIINLIDDDDDNYDDDDEIKQHNKEFTVELQKEMKTKDKKKKRNPRISPDICLIPKLPDPTVPQRIVAQIDLVDSSDSEQNDDQRRCFNDEELPLAATSVSCELDLDDENENFEMRNASTENQAKNKATRNTNPDSDQEEDVYDIVDGYTPDLRWKEVTDHKSRNLYECLLCGKKVQSNYNLRRHMMIHTGERPFGCDLCDRRFREFSDLKKHRKRHASETEFICMICHKNRPADHDSIRCSKCESKNLVLKPQTEAITATKMAQTMPKIRRQSPKLHESAPKQTAPVRISTPMESTTNESNLSETLDMLDTISSTTKRGRRHRAFECPLCQRKFGTRHNLKRHFMIHTGEKPFSCNKCRKPFREYSTLKKHMVTHQRDRWYKCLRCPQKYRDYLEYMAHKRTHGDLEDSLDPNCKQTSNYDFNDSNDDEQLSSPDNWLECCECGDRFTDIDAFTVHIRQHDPQICYQYECYICEENFEERDALEAHMSTQHKIDCKKQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -