Basic Information

Insect: Stegana nigrithorax
Gene Symbol: -
Assembly: GCA_037044495.1
Location: JBAMBQ010001653.1:25228-27994[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2 96 3.8 6.3 3 23 35 55 33 56 0.94

2 16 0.034 2.7 8.7 2.6 2 19 98 115 98 117 0.92

3 16 1.2 94 3.9 0.3 2 23 130 151 129 151 0.84

4 16 0.06 4.8 7.9 3.3 1 20 187 206 187 207 0.93

5 16 6.6e-06 0.00053 20.4 0.5 1 23 213 236 213 236 0.96

6 16 0.0011 0.089 13.4 0.9 3 23 242 262 240 262 0.95

7 16 0.031 2.5 8.8 0.0 1 20 270 289 270 291 0.93

8 16 0.00053 0.043 14.4 1.1 1 23 310 334 310 334 0.92

9 16 3.8 3.1e+02 2.3 4.8 1 21 339 359 339 360 0.91

10 16 0.0014 0.11 13.1 0.5 1 23 374 399 374 399 0.97

11 16 0.0014 0.11 13.1 2.2 1 23 425 448 425 448 0.97

12 16 0.0005 0.041 14.5 0.5 2 23 454 476 453 476 0.90

13 16 0.18 15 6.4 0.5 2 23 480 502 479 502 0.95

14 16 0.013 1.1 10.0 2.7 1 23 508 530 508 530 0.95

15 16 0.032 2.6 8.8 0.0 1 23 534 557 534 557 0.94

16 16 0.0021 0.17 12.5 0.2 1 17 563 579 563 580 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2	96	3.8	6.3	3	23	35	55	33	56	0.94
2	16	0.034	2.7	8.7	2.6	2	19	98	115	98	117	0.92
3	16	1.2	94	3.9	0.3	2	23	130	151	129	151	0.84
4	16	0.06	4.8	7.9	3.3	1	20	187	206	187	207	0.93
5	16	6.6e-06	0.00053	20.4	0.5	1	23	213	236	213	236	0.96
6	16	0.0011	0.089	13.4	0.9	3	23	242	262	240	262	0.95
7	16	0.031	2.5	8.8	0.0	1	20	270	289	270	291	0.93
8	16	0.00053	0.043	14.4	1.1	1	23	310	334	310	334	0.92
9	16	3.8	3.1e+02	2.3	4.8	1	21	339	359	339	360	0.91
10	16	0.0014	0.11	13.1	0.5	1	23	374	399	374	399	0.97
11	16	0.0014	0.11	13.1	2.2	1	23	425	448	425	448	0.97
12	16	0.0005	0.041	14.5	0.5	2	23	454	476	453	476	0.90
13	16	0.18	15	6.4	0.5	2	23	480	502	479	502	0.95
14	16	0.013	1.1	10.0	2.7	1	23	508	530	508	530	0.95
15	16	0.032	2.6	8.8	0.0	1	23	534	557	534	557	0.94
16	16	0.0021	0.17	12.5	0.2	1	17	563	579	563	580	0.93

Sequence Information

Coding Sequence: ATGCCTATTTCAACTGAATACGATCGGATAGATATTGTAGCGTATCTTGATGAAGCTATAAAAACGGATTTCACTACTTTAAAGTTCGATTGGAGCATTGACTGTAAAGTTTGTTCCTTTAAGTGCCAAAGTTTCGATCAGCTATTTGCCCATATTTGCAACCATCAtagcttaaaaaataacttttttccTTGTTCGGTAGACAATTGTGAACCGTTAAAAGGTGAAAAACTGTTGGCTAGACATCTTGTGCTAAGACATTCTCCATTAGATAAATTGCAAATATATGGTAGCTGCCCGGATTGTGGATTCACGTTTTCAAATTTCCAAGTCTTCAATAAACACTCCTGTGCTCGCATGATTAAACGTCGTCGGGGAATGCGTCTTTATTGTGAAATGTGTGGCATTGATTTTGTATCTATGAAACgTTATGTTTTTCACATGCAATATCATTTGGAAAAGAGAAGACCCAGAATCTgttttatatgtaattatgAAAATAGCAACATTGAAGGACTGTTCGAACatgtttgttacgaccatgaACCGGAGAATACTTTTGCTTGCAGGCTGTGTGATCGCAACTTTAAAGAtgaacataaattatttgacCATAAGCATGCTGGAATTGGAGAGTACATATGCGATTATTGTAAGAAAACTTTTGTTAGCAAGCCACGTTTATTAGCTCATATGAGAGGAACACACACAACACCATTGTTTTGCCCTACTTGCGGTGAGCATTTTATGAATGAGTCCAAGTATCGTATACACCAAGAATGGCATTCGAATATGGAAACCGAGATGCATTCTTGCAGTATTTGTGGCTTCATTAGTGTCGACCAAGATAAATTAATCgAACACGTAAGCTTGCCCGAAATAGAATGCTTTGGCGCTGGTATCGAATCAGCATTGGTCTCTGTCGCTTATACCTGCGAATTTTGTTCGCtggattttaaaaataagaatgatttaaaaatgcatcGATCGACTGGCATTCACCTTGATGGTCAGTACGTTTGCCTACCATGCAAAAGAACTTTCTGCACAATGAAACTTTATCGCACGCATAAGAAACACAAATTGccagaattaaaaaaagctaatatttgttattattatatgtgtaATGTTGATAATTGTGAAGAAAGCTATGCGCAATGGAATTCGCTCTACACGCACAAACGACGAAACCACGATTCAAGTAAGATAACTGAAGCAGAGGCAGAAGAAGATGAGGATATGGATCAAAAGGAGACAAGCAAAATAGTATTTACTTGCCAGTTTTGTAACAAAATTTGCCCAACTAAAATGTCTTTATCTGTACATATAGCCAGACGTCATAATAATAAAAATGTGACATGTTCTTTCTGCAATGCAAGCTTCAAAGATAAAGCAGGTTTAAAGAAACATGAAGATTATATGCATGTGCCCATCGAGTGTGCCGAATGttgtaaaatagttaaaaatcGGAGAAATTATGAGGTGCACGAGCGCGTGGTGCATATGGCCGAGAAACgttatttttgtaaagtttgTGAGAAAGGTTTTTACCATAAAAGCGATAAGGATGCCCATGAAAAGctGCATGATGAAACTTACGCTTGCGAGGAATGCCCGTTTATAACAAATTATGCTAAATCCCTTGAAATACATGTGGCTAGTATGCATCGTTTGGAGTTTGATTTTGAGTGTTCTATATGTAATCGAAAATTTGCCCGCAAGCAGGCTTTAAAAGCAGCCGACGGCGATGTGGAATGTGAAGTTTTTGAGGATATCAGTTTTGACGAAGATTGTGTGGAAATGGGTCAAGTCCATCTAATAAAGGGAAAGGTTCTTCGAACTGGTGACGATTTTGAGAGCAAAGAATTTGATGAGGAAGAAGAAGATTACGAATATGTGCTTCTTAAAGACGAAATTAAATAG
Protein Sequence: MPISTEYDRIDIVAYLDEAIKTDFTTLKFDWSIDCKVCSFKCQSFDQLFAHICNHHSLKNNFFPCSVDNCEPLKGEKLLARHLVLRHSPLDKLQIYGSCPDCGFTFSNFQVFNKHSCARMIKRRRGMRLYCEMCGIDFVSMKRYVFHMQYHLEKRRPRICFICNYENSNIEGLFEHVCYDHEPENTFACRLCDRNFKDEHKLFDHKHAGIGEYICDYCKKTFVSKPRLLAHMRGTHTTPLFCPTCGEHFMNESKYRIHQEWHSNMETEMHSCSICGFISVDQDKLIEHVSLPEIECFGAGIESALVSVAYTCEFCSLDFKNKNDLKMHRSTGIHLDGQYVCLPCKRTFCTMKLYRTHKKHKLPELKKANICYYYMCNVDNCEESYAQWNSLYTHKRRNHDSSKITEAEAEEDEDMDQKETSKIVFTCQFCNKICPTKMSLSVHIARRHNNKNVTCSFCNASFKDKAGLKKHEDYMHVPIECAECCKIVKNRRNYEVHERVVHMAEKRYFCKVCEKGFYHKSDKDAHEKLHDETYACEECPFITNYAKSLEIHVASMHRLEFDFECSICNRKFARKQALKAADGDVECEVFEDISFDEDCVEMGQVHLIKGKVLRTGDDFESKEFDEEEEDYEYVLLKDEIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -