Snig003112.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010001680.1:1448966-1455929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.15 12.7 1.3 1 23 1663 1686 1663 1686 0.97 2 13 3 2.4e+02 2.6 0.7 1 23 1884 1906 1884 1906 0.91 3 13 0.0002 0.016 15.8 2.7 2 23 1909 1930 1909 1930 0.97 4 13 7.6e-05 0.0061 17.1 0.2 3 23 1938 1958 1936 1958 0.98 5 13 1.2e-06 9.3e-05 22.8 2.7 2 23 1965 1986 1964 1986 0.97 6 13 8.4 6.8e+02 1.2 0.3 5 23 1999 2017 1997 2017 0.96 7 13 1.5 1.2e+02 3.6 5.4 3 23 2024 2045 2022 2045 0.93 8 13 0.16 13 6.6 0.2 2 23 2056 2076 2055 2076 0.96 9 13 8.4e-05 0.0068 16.9 0.4 1 19 2082 2100 2082 2104 0.95 10 13 1.6e-05 0.0013 19.1 2.1 1 23 2112 2134 2112 2134 0.99 11 13 0.00011 0.0091 16.5 7.6 1 23 2140 2162 2140 2163 0.96 12 13 0.00022 0.018 15.6 5.4 1 23 2168 2190 2168 2190 0.98 13 13 0.0019 0.15 12.7 6.0 1 23 2196 2218 2196 2219 0.96
Sequence Information
- Coding Sequence
- atgGTTGAAAACGTACAATGTCCCGTGTGCACGTTGTTCTTGCACGCGGGCATGAACCTCTCCGATCATCTGGAGACACATCCCAAAGAGCAAGTTATCAAGGCGCTTGTGCAAATGACGATCTCAGGTGGCGGTGCGGCTGGTGCCAGTGCAGCTTTGGCAAATGCGCTCTCAGGTAGTCTCGATAGTCAAAAGCACGAAAAAACGGAAACGAAAGCCACGACGACGGGGACAGATGTTAAACCAATAATTGCCGATGTCGCCGCAGTCTCCGCCACAACTGCAACACCGACAatcacaacaaacacagcggCGTCCagtgcagcagctgcaactactccaccaccaccaccaccaccaccaccgaaatcaacaacaacaacaacataccaAGAAAATCCAGCAAAATGCTTAACCATTGCACCCGCGGCTGCCAATTCCATTGAAGCAAACACAGCCACAACGccagcgtcgtcgtcgtcttcttcttcttcatcctCAGCGTATGCTTTAACATGCAatccaaaattaaaacacaaacgcTACGACGAAGCGTTAAAcgcggcagcaacagcgccGCCATCAGCATCCTCCCCAACGCCAACGACAATGCCGCAGATCATTGGCGTTATGGATGTTAGCTTACCCGCCGAACAGACGACGAATCGTGCACGCACGGCTGCTGCGTATCAACCTGCGTTAAATGATTATCATCGCAGTAGTGGCTATGCACATGGGAATCGTTTTgagacacagcagcaacagcaacaacaacagcagccacaactcAATGCATTGCAACAGCATGCGACGCAGGTGGTGGCTGCCCTTAGCTTGCCAACTTCAACGCTGGTGCCCACGCAGCTGACAGGTGGTGGCGCCTTTAATGCaacgccacaacaacagcagacgacgacggcgacaacAGCAGCGTCGACAACGGGTCACTATCAGCAACCACCGCAAACaccacagcggcagcagcagcagcaactgcaacaacaacaacaacaacaacagccgcattATAAGCaaccgcagccacagccaccaAATAATTTGAATCTAGTTTATGCGCCTGcgctgccaccgccgccaccgttGCAGCTTTTCACCGCGCATCAGACGCCTCAGCATCAGAAACCGCCACCTGCATATGGCACTGCAATCAGTCAAATACGATCTCAACATAACCAAAATagaaatcaacaacagcatcagcagcagcaacaccaaccaCAACAAGTCTCgccagccacaacaacattagcacataagcaacaacaacagcaccagcagcaacctATGCCCGTTGCTCTTAAATATGTTGGTGAACCGTTACCGCTAACAGCCGCAAGCGCATCGCAGCTGCAACAACCGCATTATgcccatcatcatcagcagcaacaacaccaacaccaacaacagctgGTGCCAACGAAATTGTCAACGTCTCTAACCGCAATGGCCACACCGCGTGCCGGCATGCCCTTGGTCAGCGCCACGTCTGCTGTATTACGCCAAACAAGTTCACCGCTAATCACAGCGGCTGGTGCCATTGCCTCACCGTCGTCGGTGTTGCGTTATGCTGAGTCACCGGTAGCGCATTACTTGGAACGTGATAATGGTGACTTCATTGTGCAGGAAACACCAAAGCATATTGTGGAATGCGTGGAGAAAGATAATGGCGAGTTCTCGGTAATAGAACGCATATATCAGTCACCACCAAGTGTTCTGCATATacacgatgatgatgatgatgatgatgatgatgacgatgatgatgatgatgcagaTGAAGAAGATGTTGATATTTATGACGATGAGAATAATGTAGATGAGCATATGTCTGTTACTACATTAGATGATGTCGATGGTGATGATGAAGAAGATGAAATTTTAcccagcagcaagcaaacacaaaagttgACAACGAAAAAGCAACGCATCGCAAAGCAACCACACAGCAAAAAGCAATCGATAAGCATGCTGCATGgcaaaacgaagaagaaaacgCCACAACGCGTGCAGCCAGATGAGGAAGAGTTCTTAAGCTTGAGCAGCGGCGATGAGAGTCTCATGGAAGTGATACCGCGGACAAAAAGTCCCACAACGAAGACAACTCGGCATCATAGCAATAATGCGAGCGGCACAACACGTGCGAAAAGCGGTCAgcttcagcatcagcaacagcagcatcagccgcAGCAATACCTCCAACCCTTGCCATTATCAACAGCTCCATCGACCAGTGGTGCCGGGGCCAGTGCAGCGAATGTTGAAAGCTCgaatagcaatagcagcagcacaacaacaactacctCTGGCAACAGCAATACGCCACAGCCGCGCAAGTCCAAGAAGAACACCATAACCGTGCTCAGTGATGTGCCGCTGAACATGAACGAATACTTGGATCTGGTGGGCAACATTTTGGCTTCCAATAAGTTTTCGAATCAACGTCCATTTGGTACAATGGCGCCTCTACCCTTGGTAAAGGTTGAGAAAGAAGAACCAATAGATGAATATGAACAGCTGCCAACGGCAACGGATGTAGCGGCGCATACTGCAAACACAttagcaaccacaacaacaacaacaacaacacgaactaTACCACCTGTAATACCAAATGCCAAtgagactgagactgaacAATATGTGGCAATTAGTGATAAGCAAAATAAGCAGTTAATAAGCAACGAAGAGCAGAAGCCGACGCCAACATTCGATGCgcattatcaacaacaacaccaccaccaacaacaacaacaacaacgccatcagcaacatcaacaacatgaacaaacacatacacagctAGCAGAGAATacaacgagcagcagcagcagcatacatGTGACAACAAGCGTCATACGCATGGCAACAACCACCAACAGCAGtcagtcgcagcagcaaacCCAGCAGCATATGCTGCCCGAAGATCTGACACAGCCGCTGGTTAAAGTTGAAGAGGAGCAGCCACAGGCAAGCCAGGCGCCACAAAGATTGCCACCAACGCCGCTGAAGCAACGCGGTCCAAAAAAACTAATCAtcaagccaaaaacaacaacaacagcaacagccgcagcgaCAACAGTGCCGGCGCCGATGACAATGCCTAAGAAATCACAGGCAATGCTTAAGACTGAAGTGGACAGCGGCAATGTGGCAACAACttcagctgctgccgccgccgctgctcaGCATAGTCTGGACCACGACGAGATTTTAGTAAAGAATGAGCCCGTGAGCTATGCTACCTATGAAGTGCAGGCAACGCCGCCAGCAAATAGCATTTTGGAGAAGCATTTGAAATTGCTGAAGGAGGAGAGCGAACAGCAACGGACCAAGTGTGAACTGGGCGGCATTAGCCATCacaatgatgacgacgatgcaCGCGTACTGCTGGACTTTGCCAATGCCTCACTGCTGGGTGCACAGGCGATCAATGGCAGCTTTCCCTCGGCCACGTCCATGTTCgccagcaatggcaatgcacAGCTGAAGTCGCATGCCAATGATGCGCTGGCAACGGCCAAGTGCAGCAGTGAGGAGTACATCTTGCCCGATAACACCGACATGGATGAGATTGTGATATCCTCTTCATCGTATTCCTCACGCTCATCGGTGAACGATGTATGCGCGTtggtgcagcaacaacagcagcacgcacatgtgcaacagcagccgcagccacaatCACTAAGCGCAGTTGGCGGCTTGCTGCTGCACAATGTCAGTGCACAGGCGCAAAATTTAACACAGGCAGGCGCAGTTaatgatttcaattttctCTATAATCCTGCCAATGCCACGCATGCGTACCAGCTATTGGATGGCAATAATaaatcggcagcagcaacgcattTCACACCATTCGcatatcaacagcaacagcagcagcagcatacgcATGATGCCACCAATGCGGCCACCGTAGCCTCATCCAATTCCATTATATCCGCACTCAGTGGCGAGGATTCACTCAGCAGCTCGTCACGTTCGCGCTTGGCACGCGAGCAGACGACATCGAATGCTGCCACAGCTGGCTCAGCTTGGTACCAgctgcatcagcaacagcagccacatcatcatcataaccAGCCGCAACTAACGAACTTCAATGCCGCGCTGGCAGTCGACTGCAGCGCTGCTGTGGATGGTGTCACGGATATTGTGGGCAGCAGCAAGTATCTGGACTTGGATGCCTGCAAGCGTGAGAATATTAGCAATAGCAATTCGCATGCGGCATCCACATCGACGCTGTTGCCGCCATCGTCGTCCTGCTCATCCTCGTCGGCATCGTTCATTGCCGGCAATGAGTGCAGTCTGGCGGGCGGTTGCACTGCCGATGCGCTTAACATACGCACCGATGAGAAGATGCCAGCGAAGGGCGAGATCAGCGAGCAGGAGAGCAATTGCGATATTGAGAACTCGTGGAGCCAATCGaTGTATGGCGACATCTCGGCACGTCTTTTTCGTAGCTATGCGCAGGAGAATGGCTGGCAGCATGATGAATACTTTTCGGTGCAGAACCTAAGCGCAGCACATGCGGCTGgcgagcaacaacagctgcagactcagcagaaagcaacaaagagcTTTGATTTCCGTTTGCCCCTGGAGGCAGCTACCAATGCAGCAGGCGCCGCCTCACATGCTAGTGGCAGCAATTTGCACTTTGCACTGGCTGCGCAACATAGCGATGCCATGCCCTCCACGTCGAATGCCTCGAAGCATGCCAAACGCAAACGTGATGCACAGCATGTGCCCACAGCCACCATAACATCGCAGcagatgctgctgcagcagcaaacgcatGACGATGCGCCGACAACATCGGCAGCTTTGTTGGCAGGTCCATCAGCAGCATTCGCAGCAGCAAATCTAGCCGCTGGCGGCACACTTAACGGGAATAGCAACGCTGCTGCTGAATTAAATGCGAACACGTCGAGTCATGGCGATCGTAGAACACGCAAAGTGTACAAATGCGATCACTGCGATGTTGTCTTCCGCAAGCTCAAGGATCGTACCGCGCACTTGGTAACGGAGCACAACTATGTGCGGCGCAATCGACGCTTGGTCTGCGTGCAGAGCATTATGGCAACTGCCAGCACGACAACAATCACGCGAATGGTTGACTACAATGCAACGGCAACGGTTGCGGCCGCGGCATTGGCCACATCTAGCGACGCTGCGTCCGACGCTTTGTCCAACAGCAATCAACAGGATGTCACAAAAGCCGATGAGATGGAAGATTTGAAACATCATATcgtcaaaattaaaatggaaCACTGCAGCGGcgaacatcagcagcaggcgcagcaCAGCGAGGAGCATGCAGCGCTGGCTTTGAAAATCGATGCACACGACGTGGTGCTACGCGCTAAAACGGAATTTGCCGATGTCAAGGATGCCAGTCTGacggctgctgccgctggcaCTTCGGGCGGTGCACAAATCATTGCGCATGCGAGCACGGATGTGGATACGAAACCCACGCTGCAGACCGCTTTGCTAGGCAAACATATACCGGCCTCGAAGTTAGCCACACTCTATCGCATGCTGACCGGTTACAATATATCGAAGCTTAAGCAGGAACGCAATCTGAGCGACTTGGAGCAGAAGGTCATGGAGAACTCGATATTTCTATGCTATGTCTGTCACACGGATTTCCCATCGGTGAAACTCTACGATGCGCATTTGACGGAACATCCGGCAGAGTGTTTCACCTGCGGCAAGAAATTCTATCGTTGGAAGAACTTCTCATTGCATTTGAAACGTCATCTCGGCTGGAAGGAATTCGGTTGCTATGTGTGCGATAAGAAATTCGTAGTGCGCAGCGCGCTGGTGGAGCATATGCGCATGCACACCGGCCAGACTCCGCTCAAGTGTGGCGTGTGTGGTAAACGCTTTAAGCGCTACTCGAATCTGACGCAGCATCGCAAACGTCACACCAAGCAGATTATACGCAAGAAAGAGTATGTCTGTCATTGCGGCGAGGTGCTGCCCTCCAAGGCACGCTATCTGTGGCACAAAGAGACCCACGACTCGAAGCCCAAGTGCTGTCCATACTGCTGCGATCGTTTTGTGCATGCCAATTCGTTGCGTCGCCACATACGCTTGGCCCACTCCGATAAATTCGACTATACCGAACCCATGGAGTGTCCCATGTGCAAGCAGATATTCGCCAAGACGTCAATTAAGGCGCACATGGCCACGCACTCGATGGGCACGCAGTACGATTGCGCCATTTGCAATAAATCATTTTCGACCAAATGGAATCTGAAGATGCACTCCTGGGTGCATGCGAATCGCACTGCGAAGCCCTTCAAGTGCGAGCACTGCCCCAAGGCATTCGTGCGTGAATTGGACTTTAAGAATCACATGAACTCACACAAACAGATCAAGCCATACACCTGTGAGTATTGCGGCTGCAAATTTATACGCAAATACAATTATATGCGGCATCGACGTGAGCATCATGGCAATAAGAAATTCACATGTGATCTATGCGACAAGTCCTTCCATCGGCATTACTATCTGATCGAGCATCGGCGCATACACACCGGCGAGCGTCCATTCCAGTGCACGATCTGCGGCAAGAGTTCCACAACGAAGACAAATCATAATAAACATCTGAAGATACATCACTCGCGTGATCCCTTCACAGTGGAGGTGTAA
- Protein Sequence
- MVENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTISGGGAAGASAALANALSGSLDSQKHEKTETKATTTGTDVKPIIADVAAVSATTATPTITTNTAASSAAAATTPPPPPPPPPKSTTTTTYQENPAKCLTIAPAAANSIEANTATTPASSSSSSSSSSAYALTCNPKLKHKRYDEALNAAATAPPSASSPTPTTMPQIIGVMDVSLPAEQTTNRARTAAAYQPALNDYHRSSGYAHGNRFETQQQQQQQQQPQLNALQQHATQVVAALSLPTSTLVPTQLTGGGAFNATPQQQQTTTATTAASTTGHYQQPPQTPQRQQQQQLQQQQQQQQPHYKQPQPQPPNNLNLVYAPALPPPPPLQLFTAHQTPQHQKPPPAYGTAISQIRSQHNQNRNQQQHQQQQHQPQQVSPATTTLAHKQQQQHQQQPMPVALKYVGEPLPLTAASASQLQQPHYAHHHQQQQHQHQQQLVPTKLSTSLTAMATPRAGMPLVSATSAVLRQTSSPLITAAGAIASPSSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKDNGEFSVIERIYQSPPSVLHIHDDDDDDDDDDDDDDDADEEDVDIYDDENNVDEHMSVTTLDDVDGDDEEDEILPSSKQTQKLTTKKQRIAKQPHSKKQSISMLHGKTKKKTPQRVQPDEEEFLSLSSGDESLMEVIPRTKSPTTKTTRHHSNNASGTTRAKSGQLQHQQQQHQPQQYLQPLPLSTAPSTSGAGASAANVESSNSNSSSTTTTTSGNSNTPQPRKSKKNTITVLSDVPLNMNEYLDLVGNILASNKFSNQRPFGTMAPLPLVKVEKEEPIDEYEQLPTATDVAAHTANTLATTTTTTTTRTIPPVIPNANETETEQYVAISDKQNKQLISNEEQKPTPTFDAHYQQQHHHQQQQQQRHQQHQQHEQTHTQLAENTTSSSSSIHVTTSVIRMATTTNSSQSQQQTQQHMLPEDLTQPLVKVEEEQPQASQAPQRLPPTPLKQRGPKKLIIKPKTTTTATAAATTVPAPMTMPKKSQAMLKTEVDSGNVATTSAAAAAAAQHSLDHDEILVKNEPVSYATYEVQATPPANSILEKHLKLLKEESEQQRTKCELGGISHHNDDDDARVLLDFANASLLGAQAINGSFPSATSMFASNGNAQLKSHANDALATAKCSSEEYILPDNTDMDEIVISSSSYSSRSSVNDVCALVQQQQQHAHVQQQPQPQSLSAVGGLLLHNVSAQAQNLTQAGAVNDFNFLYNPANATHAYQLLDGNNKSAAATHFTPFAYQQQQQQQHTHDATNAATVASSNSIISALSGEDSLSSSSRSRLAREQTTSNAATAGSAWYQLHQQQQPHHHHNQPQLTNFNAALAVDCSAAVDGVTDIVGSSKYLDLDACKRENISNSNSHAASTSTLLPPSSSCSSSSASFIAGNECSLAGGCTADALNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISARLFRSYAQENGWQHDEYFSVQNLSAAHAAGEQQQLQTQQKATKSFDFRLPLEAATNAAGAASHASGSNLHFALAAQHSDAMPSTSNASKHAKRKRDAQHVPTATITSQQMLLQQQTHDDAPTTSAALLAGPSAAFAAANLAAGGTLNGNSNAAAELNANTSSHGDRRTRKVYKCDHCDVVFRKLKDRTAHLVTEHNYVRRNRRLVCVQSIMATASTTTITRMVDYNATATVAAAALATSSDAASDALSNSNQQDVTKADEMEDLKHHIVKIKMEHCSGEHQQQAQHSEEHAALALKIDAHDVVLRAKTEFADVKDASLTAAAAGTSGGAQIIAHASTDVDTKPTLQTALLGKHIPASKLATLYRMLTGYNISKLKQERNLSDLEQKVMENSIFLCYVCHTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCGVCGKRFKRYSNLTQHRKRHTKQIIRKKEYVCHCGEVLPSKARYLWHKETHDSKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIFAKTSIKAHMATHSMGTQYDCAICNKSFSTKWNLKMHSWVHANRTAKPFKCEHCPKAFVRELDFKNHMNSHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -