Basic Information

Insect: Stegana nigrithorax
Gene Symbol: -
Assembly: GCA_037044495.1
Location: JBAMBQ010004880.1:101930-103870[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.22 17 6.2 3.6 2 23 212 234 211 234 0.94

2 10 1.6 1.3e+02 3.4 4.5 6 23 244 261 244 261 0.99

3 10 1.6e-06 0.00013 22.3 1.2 1 23 267 290 267 290 0.98

4 10 1.6e-05 0.0013 19.2 1.0 1 23 299 321 299 321 0.98

5 10 5.5e-05 0.0044 17.5 0.3 1 23 330 353 330 353 0.97

6 10 0.013 1.1 10.0 1.0 2 23 358 379 357 379 0.95

7 10 6.4e-05 0.0052 17.3 0.1 1 23 387 410 387 410 0.96

8 10 4.9e-05 0.0039 17.7 0.1 1 23 417 440 417 440 0.96

9 10 2.2e-07 1.8e-05 25.0 0.6 1 23 446 468 446 468 0.99

10 10 0.00028 0.022 15.3 10.8 1 23 474 497 474 498 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.22	17	6.2	3.6	2	23	212	234	211	234	0.94
2	10	1.6	1.3e+02	3.4	4.5	6	23	244	261	244	261	0.99
3	10	1.6e-06	0.00013	22.3	1.2	1	23	267	290	267	290	0.98
4	10	1.6e-05	0.0013	19.2	1.0	1	23	299	321	299	321	0.98
5	10	5.5e-05	0.0044	17.5	0.3	1	23	330	353	330	353	0.97
6	10	0.013	1.1	10.0	1.0	2	23	358	379	357	379	0.95
7	10	6.4e-05	0.0052	17.3	0.1	1	23	387	410	387	410	0.96
8	10	4.9e-05	0.0039	17.7	0.1	1	23	417	440	417	440	0.96
9	10	2.2e-07	1.8e-05	25.0	0.6	1	23	446	468	446	468	0.99
10	10	0.00028	0.022	15.3	10.8	1	23	474	497	474	498	0.97

Sequence Information

Coding Sequence: ATGATGTTTTGCAGattatgcttaaatatttgcgAACAAGGTGAACTTTTATATAATGTGATGCTACAAGAGACCGAAACCTACAAAATTGTCTTCAAGTTCTTTGGGGAACATctCTCAAAAGATATTAATTGCACCGAGGAACAACGAAATAAGTATGGCATTATTTGCACGCTGTGCTGGGCACACATTCGCGAATTCGAACACTTTCGTGCAGGTATAGCAGTTGCGCAGCATCAGTATGAAGTACTTGTACAATTGGAGGAAATCGTGAAAGAAGAAACCGACATAATCGAGTTTCCACAAGAAACACTTACCCGCCCGATCAAACAGGAAATACTTGATGAATCACCACTGCCGCTGGACGTGCACAGGGCTGATTCGCCCTTATCATTCGAAGCCTCAAATCAGtatgatgacgatgaacaATTGCATTGGGAGAGTCAGACAAGTTCCGACGATACAAAACCTTTGCTGGATCGTTTGTGTGAAAGCCGTGAAGTTAAACGTAATAAGCAACCAAAAAGAAACGCTAGCAAGCAGCTGGCCGACAGTGAGAGCAAAAAATGccagcaacgcaacgcaaaaacacAAGAGGCAGACGCTTTCATTCAGACACACAAACCACTGCTGGAGTGCAGTATATGTAACGTTAGCTGCACTAGTTTCACACAAATGCACGTACACTTTCGTGAGCAGCATACTGGTCAGCGGCCGTTTGTCACATGCTGTCATAAAAAGTACTTTtatcgttttcattttgttgagCACTTGCGTGTACATCTAAATGCGGAACATTTCAAGTGCAGCATCTGTGGCAAATGCAGCGCCAACAGCCGTAGTCTAGCAACACATATGAAAGTCATACACTCGATAAGTCGCGATGACCGCCGCTTTGAGTGTGAAATATGTCACAAGCGATTTTCAACAGCACCGATACTACGTTCTCATATGGAAACGCATACAGAAGCCGAAAGTGACAAGAATTTCAAATGTTCCGAGTGTGGCAAAGGATTCGTTTTGGAAAACCGTTTGAACATTCACATACGCAACACGCACAGTCGGGCGTGCGTTTGCGAATTATGCGGACGTACGTTGAAGAATCCGTATATACTGAAATACCACTTGCTACAACACAACGTCGAAGGTAAACCGAAATTTAATTGCGACATTTGCGGCACCGTATTGGCATCGAAATTTGGTCTGAAACGACATATTGAGTCCATACACAATGACGGCAGCATGACCTACGAGTGCAGCGAATGCGGCAAAGTATCGGCTAATGCTAATGCGCTGCGTAGTCACAAAAAGTACGTGCACGAACGACAGCGCAACTACAAGTGCACTATCTGCGTAAAGgcatttaaatcaaatgatGCGCTCAAGGATCACATGTCGACGCATACGGGTTTAGATCTTTACAAATGCCCACACTGCGATCGTACGTTTAAGTCACGCGCTAACGTGCATCACCATCGCAAGCGAAAACATCATAAGGAATGGGCGGAGAATCTGCGCATACAGTACAGATGA
Protein Sequence: MMFCRLCLNICEQGELLYNVMLQETETYKIVFKFFGEHLSKDINCTEEQRNKYGIICTLCWAHIREFEHFRAGIAVAQHQYEVLVQLEEIVKEETDIIEFPQETLTRPIKQEILDESPLPLDVHRADSPLSFEASNQYDDDEQLHWESQTSSDDTKPLLDRLCESREVKRNKQPKRNASKQLADSESKKCQQRNAKTQEADAFIQTHKPLLECSICNVSCTSFTQMHVHFREQHTGQRPFVTCCHKKYFYRFHFVEHLRVHLNAEHFKCSICGKCSANSRSLATHMKVIHSISRDDRRFECEICHKRFSTAPILRSHMETHTEAESDKNFKCSECGKGFVLENRLNIHIRNTHSRACVCELCGRTLKNPYILKYHLLQHNVEGKPKFNCDICGTVLASKFGLKRHIESIHNDGSMTYECSECGKVSANANALRSHKKYVHERQRNYKCTICVKAFKSNDALKDHMSTHTGLDLYKCPHCDRTFKSRANVHHHRKRKHHKEWAENLRIQYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -