Snig015412.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005114.1:70802-78002[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.018 15.6 3.4 1 23 266 288 266 288 0.98 2 11 0.00012 0.0097 16.4 9.2 1 23 294 316 294 316 0.96 3 11 8e-05 0.0065 17.0 6.6 1 23 322 344 322 344 0.98 4 11 0.0077 0.62 10.7 4.6 1 20 350 369 350 372 0.90 5 11 2.4e-05 0.0019 18.6 0.5 1 23 378 400 378 400 0.97 6 11 3.1e-06 0.00025 21.4 0.1 1 23 406 428 406 428 0.98 7 11 7.5e-05 0.006 17.1 2.0 1 23 433 456 433 456 0.97 8 11 5.9e-06 0.00048 20.5 1.9 1 23 462 485 462 485 0.96 9 11 0.00018 0.014 15.9 0.1 1 23 544 566 544 566 0.98 10 11 0.011 0.91 10.2 2.7 1 23 693 715 693 715 0.95 11 11 0.0047 0.38 11.4 4.9 5 23 728 746 720 746 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCGGCTCAGAGTAATCCGCAGCCAAACTTTGGCTACACCTGGGGCTTCGCCGACAACACGCGGGCCGAATCGGTGCTCGAGATATCGCCAAACATCAACTACACCGTCAGTGGTGAGACTATGCCATATCTGCTGTCCACGGATGGATCGTTAACCGTCCAAAAAGACGTCAAAGGTCTGACTACCACGAATAAAGGCAACGTGGTGCGCCGCATGTTTGTCGTCAATGACTCGTTTGCGCCGGGCACACAAAGAGTAATAACCACTGGTGCGGGTTCGACAGTTGTCAAAAAACAAGATCAACAGGTGTTGAGTATAAATTGTGACAAAAACTatctcTTAGTTGATCAAgccacagcagctgcagcggctGCCGCTGGTGGCGATCACACGCATTCACTTACGAATGGCTTAGTCGATGCCAAGGGGCAAACGGTACTGGGGCCAGCATCTAGCGGAAAGACACACTTTAGCCCGATTGGGCCGCTGCATCTTACACCGGAGGAATGCAATGAGATACTTATGAAACGCGCGCTTGCTGCCACACATCAGACGCACACGATTACAACAGCTGATGGCCATGCGGCGACGACAGCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTAGAAGATAATGACGACTCCCAGGGTGACGCACCCAATTTAAAATTGGAGCCAGGTACACTAGAATTGTCCCCAAAGACCGAACTACAAGAATCAATAAGTTTCAATGAAGGTGATGCTACCATTAAGAAGGAGCGTCCATATAGCTGCGATGAATGCGGCAAATCATTTTTGCTCAAGCACCATCTGACTACACATGCGCGCGTTCACACAGGCGAACGTCCGCATGTCTGTCCGCATtgtggcaaaagttttgcgcACAAACATTGCCTGAATACGCATCTGCTGTTGCACTCGACGGATCGACCATATCAGTGTACTGAGTGCAAGAAGAGTTTCACGCTGAAACATCACTTGCTAACGCATTCACGTGTTCACAGTCGTGAccgtccgtttgtctgtcagGAGTGCGGACGCTCTTTTCCACTGAAGCGGCATCTTGTGACACATTGTAAATTCCATGCTGGAGAACGGCCGTACGTTTGCGAGGAGTGTGGGGAAAGTTTTGCACAGGAGAACCATTTGATAATGCATTCACgCTTTCACGGTTCGGTAAATCCATTTGTTTGTCCCGAGTGTGGTGTGACCTTTCCCCGCAAATTCCAATTGGTCAACCATGGACGCATTCATGGCAAAATACCGCATTCGTGCACCATCTGCGGTAAGGAATTCTTACAAAAACGTACATTAGTTTCGCACATGCGACGCGTACACACCGGTGACCAAGGACATCCGTGTGTCACTTGCGGCGAAAGCTTTTCGACCAAAGCCGAACTGCATCAACATATACGCAGCACGCACAATAACGGCAACACAACGATTATTGCCAATCAACAGTTACAGCAGGCACATCATCAAACGCAGGCAGGGCAACATACACAACCCGCGCATCAACAGACCATAACGGTGGTCAGCAATCCCGGAAATTTGCTGACTGTCACCGCCAATGATGCAAACGGAGTGGCACGACCACAATTTGTTTGTCGTGAGTGTGGTAGTGCCTTTAATAGCCGCGAGGCGCTTGCACTGCATTTGAGACTACACACCGGTGACAAAAGTCTCATGACGGATTTATGCGCTTTGACCGCTGCGCTGCCTGGTCATTTCCTGAGCACGGCTAGCCTGAATCCCGGCACAGTTGTAGCTGGAAATCCAAATTTGGTGGCACAAAATCCAGTGCCGGTGCAAATCATATCATCTACGGGACAAGTAATGTCACAGACAACGTTGGTGCAGGCCGCCAATTCGACGCATCCCCAGACGGTGGTTACCACTGTGCCCACGATGACCGTGCACGCATCGCAACAAGCACAACTACACCAGGCAGCGGCGgcgcatcaacaacagcaacaacagcagcaggctgCGCAACAACAtgcggcagctgctgcagcagccgcagcacaaAACAAACCCAAATCGCATTTCTGCGGTAGCTGTGGCAAAGGTTTCGCCGCCAAGCACGGCCTAATGCAACACAATCGCCGTCACCCCAATGGCGGCTGCACTGTGCGCACGCATGTCTGCGAATGCGgcaaagcatttttccaaAAGAATCACCTTATGCTACATCAGCGCCAGCATCTGGAAACGAAGCCTGCCATTTCTCAACAACAGGAAGCCgcgcagcaagaacaacaggcctcacaacaacaacagcaacaacaacagcagcagcagcaacaacaacaacaacatcagcagctaAACACACGCGAAGTCATCATCGGCAATCAAGCTGTGCACGTGCAGGTGTTGCCGGCATCGAATCAGGCACAAGTcattaaatatgaaatcaaTATACCACAGGAACGACAACAGCAGATGCAAGCGGAGTAA
- Protein Sequence
- MCAAQSNPQPNFGYTWGFADNTRAESVLEISPNINYTVSGETMPYLLSTDGSLTVQKDVKGLTTTNKGNVVRRMFVVNDSFAPGTQRVITTGAGSTVVKKQDQQVLSINCDKNYLLVDQATAAAAAAAGGDHTHSLTNGLVDAKGQTVLGPASSGKTHFSPIGPLHLTPEECNEILMKRALAATHQTHTITTADGHAATTASDILPGISVQVQKVIQGLEDNDDSQGDAPNLKLEPGTLELSPKTELQESISFNEGDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCPHCGKSFAHKHCLNTHLLLHSTDRPYQCTECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHCKFHAGERPYVCEECGESFAQENHLIMHSRFHGSVNPFVCPECGVTFPRKFQLVNHGRIHGKIPHSCTICGKEFLQKRTLVSHMRRVHTGDQGHPCVTCGESFSTKAELHQHIRSTHNNGNTTIIANQQLQQAHHQTQAGQHTQPAHQQTITVVSNPGNLLTVTANDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVAGNPNLVAQNPVPVQIISSTGQVMSQTTLVQAANSTHPQTVVTTVPTMTVHASQQAQLHQAAAAHQQQQQQQQAAQQHAAAAAAAAAQNKPKSHFCGSCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEAAQQEQQASQQQQQQQQQQQQQQQQHQQLNTREVIIGNQAVHVQVLPASNQAQVIKYEINIPQERQQQMQAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062175;
- 90% Identity
- -
- 80% Identity
- -