Basic Information

Insect: Stegana nigrithorax
Gene Symbol: -
Assembly: GCA_037044495.1
Location: JBAMBQ010005363.1:28695-33856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 5.8 4.7e+02 1.7 0.1 1 16 57 72 57 74 0.87

2 25 0.00021 0.017 15.7 0.9 1 23 181 203 181 203 0.98

3 25 5.8e-05 0.0047 17.4 3.6 1 23 210 232 210 232 0.99

4 25 0.00049 0.039 14.5 0.4 2 23 270 291 269 291 0.96

5 25 0.034 2.7 8.7 1.5 3 23 371 392 369 392 0.95

6 25 4.7 3.8e+02 2.0 1.8 2 23 400 423 399 423 0.90

7 25 0.039 3.2 8.5 2.7 1 23 429 451 429 451 0.96

8 25 8.2e-05 0.0066 17.0 1.2 2 23 458 480 457 480 0.96

9 25 0.0031 0.25 12.0 6.6 2 23 488 510 487 510 0.96

10 25 0.021 1.7 9.4 0.0 2 21 537 556 536 557 0.94

11 25 0.013 1.1 10.0 2.8 1 23 605 628 605 628 0.98

12 25 6.7 5.4e+02 1.5 0.2 1 16 710 725 710 726 0.87

13 25 0.00049 0.039 14.5 0.4 2 23 879 900 878 900 0.96

14 25 0.034 2.7 8.7 1.5 3 23 980 1001 978 1001 0.95

15 25 4.7 3.8e+02 2.0 1.8 2 23 1009 1032 1008 1032 0.90

16 25 0.024 1.9 9.2 3.4 1 23 1038 1060 1038 1060 0.97

17 25 4.9e-06 0.00039 20.8 0.4 2 23 1067 1089 1066 1089 0.96

18 25 0.0092 0.74 10.5 5.5 2 23 1097 1119 1096 1119 0.95

19 25 0.029 2.3 8.9 0.0 2 21 1146 1165 1145 1166 0.94

20 25 0.069 5.6 7.7 3.5 1 23 1214 1237 1214 1237 0.98

21 25 0.88 71 4.3 0.1 3 23 1276 1297 1274 1297 0.91

22 25 0.00091 0.074 13.7 2.6 2 23 1316 1338 1315 1338 0.94

23 25 0.016 1.3 9.7 0.1 3 23 1354 1374 1352 1374 0.98

24 25 0.00074 0.059 13.9 1.4 1 23 1380 1402 1380 1402 0.98

25 25 0.00034 0.028 15.0 4.9 1 23 1408 1430 1408 1430 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	5.8	4.7e+02	1.7	0.1	1	16	57	72	57	74	0.87
2	25	0.00021	0.017	15.7	0.9	1	23	181	203	181	203	0.98
3	25	5.8e-05	0.0047	17.4	3.6	1	23	210	232	210	232	0.99
4	25	0.00049	0.039	14.5	0.4	2	23	270	291	269	291	0.96
5	25	0.034	2.7	8.7	1.5	3	23	371	392	369	392	0.95
6	25	4.7	3.8e+02	2.0	1.8	2	23	400	423	399	423	0.90
7	25	0.039	3.2	8.5	2.7	1	23	429	451	429	451	0.96
8	25	8.2e-05	0.0066	17.0	1.2	2	23	458	480	457	480	0.96
9	25	0.0031	0.25	12.0	6.6	2	23	488	510	487	510	0.96
10	25	0.021	1.7	9.4	0.0	2	21	537	556	536	557	0.94
11	25	0.013	1.1	10.0	2.8	1	23	605	628	605	628	0.98
12	25	6.7	5.4e+02	1.5	0.2	1	16	710	725	710	726	0.87
13	25	0.00049	0.039	14.5	0.4	2	23	879	900	878	900	0.96
14	25	0.034	2.7	8.7	1.5	3	23	980	1001	978	1001	0.95
15	25	4.7	3.8e+02	2.0	1.8	2	23	1009	1032	1008	1032	0.90
16	25	0.024	1.9	9.2	3.4	1	23	1038	1060	1038	1060	0.97
17	25	4.9e-06	0.00039	20.8	0.4	2	23	1067	1089	1066	1089	0.96
18	25	0.0092	0.74	10.5	5.5	2	23	1097	1119	1096	1119	0.95
19	25	0.029	2.3	8.9	0.0	2	21	1146	1165	1145	1166	0.94
20	25	0.069	5.6	7.7	3.5	1	23	1214	1237	1214	1237	0.98
21	25	0.88	71	4.3	0.1	3	23	1276	1297	1274	1297	0.91
22	25	0.00091	0.074	13.7	2.6	2	23	1316	1338	1315	1338	0.94
23	25	0.016	1.3	9.7	0.1	3	23	1354	1374	1352	1374	0.98
24	25	0.00074	0.059	13.9	1.4	1	23	1380	1402	1380	1402	0.98
25	25	0.00034	0.028	15.0	4.9	1	23	1408	1430	1408	1430	0.98

Sequence Information

Coding Sequence: ATGGATACCGCAGTGTGCAGGACTTGCAATGTGCACAAAGTAGGAAATCTAAAATTGTACGAACTTTCTGCTCCTGTTGAAAATTACCCGAATAAAACGCTATCCAATTTACTCCTGGAATTGACCAACATCAATTGTCAATTAGCGAGTTCTGAAACATTGCCAAAACATATTTGTGGCACATGTAACCGTAAGCTGAAAACGGCTTACGAATTTGTATTGCAAGCACACGaagtaaacgaaaaatattacGCTGCGTTgaaaaaaactgaagaaaGCGTTCTTAAAAAATCGCCCGCATTTCCACGTCAACTGCAACAGATAACCGATCCTTTGGCTGATATGAATGCCCAATCCAATCCTCCGATTGCAGACCTAAGTGATGCAATGCTAGACGATGTGTTAGAAGAAGAGATCAATAAAAGCCAGGAAAACGATTACGAATTCCCTACCGACTGCGGCGAAGACGACGATGACAGCGTAAATGATTATGAGCCCCTAAAgccaaagaacaaaaagaagcagactcgtgaaaaattatttaaatgcgacaaatgcagcaaatcTTTTGATTGGCCCGATAGCCTAAAGACTCACATGGGTAAGCACACATCTCTAGACAAATGGTACTCCTGCACATACTGTGAACGGAAATTTTATCGCAAGGGTAGCTTCTATGCACATTTGCGTAGACATGGTGAAGatgtcaaattaaaatataaaggcCCAAATTTCAGTAGCCGGCGTAAGACACGTGCGACGTCGGTAGATGAGCACTTATGCAAGCCAAATGGCGGCAAGAATATACAATGCATGATATGTCAGCGTACATTTCAGCGTATCGAGGAATTACGCAAGCATTTGCAGGCCCATCCGAAACTGATCTACGAAGAGTGCAAGTCGTTGGCAGAGACACTTTATGGTGAAGTGAGCGATTACGGAGAAAAGGACTTGCTAGCACGTATCCGCGATGATCTCAATAAGGGTGAATATGCTCTTTTCACGTCCATAACAAATCAATGGGGCTATGAGTTAAGTTTGGATAGCTCAGACACCGAGGTCGAAACGGAAATGCCTAATGAGTTTGCGCAGCCACCCAGAAACTATGGCTGTGATCTATGCATGGCCCACTTTCCACGAAAATATCAGCTCTTTGCGCATCAGAAGAAAATGCATGCGTGGCTTGATGCGAAAATTGTCTGCGGACGATGTGATGGTCGATTTGTTAGTAGGCAAATTCTGGAACACCATCAACTTACGCAATGTCATAATCGATTGAAACGTTTTATTTGTGCTAAATGCCCACTGAGATTCAGCTGGAAGCACAATTTGCGAACGCATTTTAAAGAACATCGGcaacaacagacagtCGTTTGCCCTAATTGCAATATGAGCTTTAAGGAAAAATGTGCCCTGACCTCACACATACGCCGAGAGCACTCGAATAAGTCAAAATTCTTGAACTGTAAGTGGTGTGATCATAAATTTTATCGGCGCGATTGCCTGGTGAAGCACATGAAACGTCGACATGGCATTCAAGAACACGATGTGCCGTTGGCTGAAGCTTTAGTCCAAGCCACATCGAAACCACATGGCAAGAAATGcattgtatgcaaaatatgtaatgtaaaatTCGATTTCATTGAAGAGTTGCGTGTGCATATGCTTGAGGAACCTGAATTACATGACTATAATTCATTTGCCAACTATTCCATAACCAATGAAGCAGGTTACGAGTTGCACATTGAAGATTCCGAGACTGATAGCCATGAGGATCCATGTGACAACGAGACTGCCAGCAAAATTTCCATGTATACTTGCGAAATTTGCTTAATCCAATGCCGGCGTAAATTTCAAATCATGCAACACCAACGTACCATACACCGATTCGCAAAGCTTCCACATGAATGCGAACGTTGTGTCTTTAAATGCGTATCGAAGAATATTCTGGAACAACACATGCAGACACAATTGTGCAGGACTTGCAATGTGCACAAAGTAGGAAATCTAAAATTGTACGAACTTTCTGCTCCTGTTGAAAATTACCCGAATAAAACGCTATCCAATTTACTCCTGGAATTGACCAACATCAATTGTCAATTGGCGAGTTCTGAAACATTACCAAAACATATTTGTGGCACATGTAACCGTAAGCTGAAAACGGCTTACGAATTTGTATTGCAAGCACGCGaagtaaacgaaaaatattacGCTGCGTTAAAAATAACTGAAGAAAGCGTTCTTAAAAAATCGCCCGCATTTTCACGTCAACTGCAACAGATAACCGATCCTTTGGCTGATGTGAAAGTTGAATTCGAAATGGATAAAATGCTTGATATGAATCTTATGAGTAGGAAAACGCTATATAAAGCCAATGAAGTAGCATTTGAAAAACTAACCAAGCAAATAGCCGTTACTAGTGCCCAACCCAATCCTCCGATTGCAGACCTAAGTGATGCAATGCTAGACGATGTGTTAGAAGAGGAGATCAATAAAAGCCAGGAAAACGATTACGAATATCCTACCGACTGCGGCGAAGACGACGATGACAGCGTAAGTGATTATAGCCGGCGTAAGACACGTGCGACGTCGGTAGATGAGCACTTATGCAAGCCAAATGGCGGCAAGAATATACAATGCATGATATGTCAGCGTACATTTCAGCGTATCGAGGAATTACGCAAGCATTTGCAGGCCCATCCGAAACTGATCTACGAAGAGTGCAAGTCGTTGGCAGAGACACTTTATGGTGAAGTGAGCGATTACGGAGAAAAGGACTTGCTAGCACGTATCCGCGATGATCTCAATAAGGGTGAATATGCTCTTTTCACGTCCATAACAAATCAATGGGGCTATGAGTTAAGTTTGGATAGCTCAGACACCGAGGTCGAAACGGAAATGCCTAATGAGTTTGCGCAGCCACCCAGAAACTATGGCTGTGATCTATGCATGGCCCACTTTCCACGAAAATATCAGCTCTTTGCGCATCAGAAGAAAATGCATGCGTGGCTTGATGCGAAAATTGTCTGCGGACGATGTGATGGTCGATTTGTTAGTAGGCAAATTCTGGAACACCATCAACTTACGCAATGTCATAATCGATTGAAACGTTTTATTTGTGCTAAATGCCCACTGAGATTCAGCTGGAAGCACAATTTACAAACGCATTTCAAGAAACATCGGcaacaacagacagtCGTTTGCCCTAATTGCAATATGAGCTTTAAGGAGAAATATGCCCTGACTTCACACATGCGTCGAGAGCACGGGAACACGTCAAAGTTCTTGAACTGTAAATGGTGTGATCATAAGTTCTATCGGCGCGATTGTCTGCTGCAGCATATGGAACGTCGACATGGCATTCAAGGACATGATGTGCCGTTGGCTGAGGCTTTAGTCCAGGCCACATCGAAACCACATGGCAAGAAATGCgttatgtgcaaaatatgtaatgtaaaatTCGATTTCATTGAAGAGTTGCGTGTGCATATGCTTGAGGAACCTGAATTACATGACTATAATTCGTTTGCCTGCTATTCCATAACCAATGAAGCAGGTTACGAGTTGCATATTGAAGATTCAGAGACTGATGGTGATGAGGAGCAGTTTGGCGAGGGCACCACTGACCAAATTTCCATGTACACTTGCGAACTTTGTTTACTTCAATGCCGGCGTAAATTTCAAATCATGCAACACCAACGTACCATACACCGATTCGCAAAGCTTCCACATGAATGCGAACGTTGTGTCTTTAAATGCGTATCGAAGAATATTCTGGAACAACACATGCAGACACAATGTATGAATACGGAAAAGCAATTGGCCTGCGACATTTGCAATTACAAGTTTATGTGGTTGGAGAATTTGGATTTGCATAAACGTCTGGAGCATGCACAGGAAACAAATTGGCCTCATAAAGTGATAGGGAAAGCCACCGGTGCTCTGCAGTGCCCACACTGtgataaaaaatactttgtgCAAGGTTGTTTGAATAATCACATTAAGGATGTACACATCGACGACAATCGTAAAAAGAAAGAGGCACAGCGTCATTTGCTTTGTTCGATTTGTGGTTTTCAAGCGATATCTCAAAGTAAGTTAGTGGTGCACACACGTATTCACACGGGTGAGAAGCCGTTCAAATGTGACTTTTGTGATGCGAGATTTGCGCGGCGATATGAAGTCTCAACGCACAGACGTTTACATACTAAGGAGAAGCCATATCATTGCACTGTCTGTGAAAAAAAGTTCTCGAGTATGAAGCAACTCTTAAAACATAATCGCACGCATCTGAAgatctaa
Protein Sequence: MDTAVCRTCNVHKVGNLKLYELSAPVENYPNKTLSNLLLELTNINCQLASSETLPKHICGTCNRKLKTAYEFVLQAHEVNEKYYAALKKTEESVLKKSPAFPRQLQQITDPLADMNAQSNPPIADLSDAMLDDVLEEEINKSQENDYEFPTDCGEDDDDSVNDYEPLKPKNKKKQTREKLFKCDKCSKSFDWPDSLKTHMGKHTSLDKWYSCTYCERKFYRKGSFYAHLRRHGEDVKLKYKGPNFSSRRKTRATSVDEHLCKPNGGKNIQCMICQRTFQRIEELRKHLQAHPKLIYEECKSLAETLYGEVSDYGEKDLLARIRDDLNKGEYALFTSITNQWGYELSLDSSDTEVETEMPNEFAQPPRNYGCDLCMAHFPRKYQLFAHQKKMHAWLDAKIVCGRCDGRFVSRQILEHHQLTQCHNRLKRFICAKCPLRFSWKHNLRTHFKEHRQQQTVVCPNCNMSFKEKCALTSHIRREHSNKSKFLNCKWCDHKFYRRDCLVKHMKRRHGIQEHDVPLAEALVQATSKPHGKKCIVCKICNVKFDFIEELRVHMLEEPELHDYNSFANYSITNEAGYELHIEDSETDSHEDPCDNETASKISMYTCEICLIQCRRKFQIMQHQRTIHRFAKLPHECERCVFKCVSKNILEQHMQTQLCRTCNVHKVGNLKLYELSAPVENYPNKTLSNLLLELTNINCQLASSETLPKHICGTCNRKLKTAYEFVLQAREVNEKYYAALKITEESVLKKSPAFSRQLQQITDPLADVKVEFEMDKMLDMNLMSRKTLYKANEVAFEKLTKQIAVTSAQPNPPIADLSDAMLDDVLEEEINKSQENDYEYPTDCGEDDDDSVSDYSRRKTRATSVDEHLCKPNGGKNIQCMICQRTFQRIEELRKHLQAHPKLIYEECKSLAETLYGEVSDYGEKDLLARIRDDLNKGEYALFTSITNQWGYELSLDSSDTEVETEMPNEFAQPPRNYGCDLCMAHFPRKYQLFAHQKKMHAWLDAKIVCGRCDGRFVSRQILEHHQLTQCHNRLKRFICAKCPLRFSWKHNLQTHFKKHRQQQTVVCPNCNMSFKEKYALTSHMRREHGNTSKFLNCKWCDHKFYRRDCLLQHMERRHGIQGHDVPLAEALVQATSKPHGKKCVMCKICNVKFDFIEELRVHMLEEPELHDYNSFACYSITNEAGYELHIEDSETDGDEEQFGEGTTDQISMYTCELCLLQCRRKFQIMQHQRTIHRFAKLPHECERCVFKCVSKNILEQHMQTQCMNTEKQLACDICNYKFMWLENLDLHKRLEHAQETNWPHKVIGKATGALQCPHCDKKYFVQGCLNNHIKDVHIDDNRKKKEAQRHLLCSICGFQAISQSKLVVHTRIHTGEKPFKCDFCDARFARRYEVSTHRRLHTKEKPYHCTVCEKKFSSMKQLLKHNRTHLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -