Snig002506.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- zfh1
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010001592.1:798388-803025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.1e-05 0.0025 18.3 0.8 1 23 203 225 203 225 0.97 2 15 0.0006 0.048 14.2 1.2 3 23 233 253 231 253 0.94 3 15 0.00011 0.0086 16.6 0.1 1 23 409 431 409 431 0.98 4 15 0.022 1.8 9.3 2.0 1 23 437 459 437 459 0.98 5 15 2.1e-05 0.0017 18.8 2.3 1 23 493 515 493 515 0.97 6 15 0.0085 0.69 10.6 0.3 1 23 539 561 539 561 0.94 7 15 0.0064 0.51 11.0 1.4 1 23 567 590 567 590 0.97 8 15 0.27 22 5.9 0.3 5 19 601 615 598 616 0.91 9 15 0.00016 0.013 16.0 5.6 1 23 625 647 625 647 0.97 10 15 0.049 3.9 8.2 0.4 2 23 653 674 652 674 0.96 11 15 1.6e-05 0.0013 19.2 0.2 1 23 683 705 683 705 0.98 12 15 0.0048 0.38 11.4 0.2 3 23 713 733 711 733 0.97 13 15 5.7e-05 0.0046 17.4 0.5 1 23 739 761 739 762 0.95 14 15 0.0025 0.2 12.3 0.1 1 23 772 794 772 794 0.97 15 15 0.0023 0.19 12.4 0.5 1 23 1373 1395 1373 1395 0.97
Sequence Information
- Coding Sequence
- ATGAACAATCAAAGTTATGGCGGCATGCAATGGATACAACATCACGCCACGACAAGTGAACTGAAGAGTGCCGCAGTAGCTGCTCAATTAATCGCTGACGCGCAGCAACTACAGGTTACCGAAATACTGGACAGCAATGgagacgatgacgacgatggcaATACTGCTGAATACATGATGGGCGATGATGATGCCGCCGACTTAGATCAGATGGCTGCAACAATTTCCAAGATATCGGCTGCCGAAAATTTGATATTCATGGCCCGCGATGGTCAGATGGTTAACGAGATAATTTCAGCACAAGACAGCGACACTGTTGTTGTGAGCGCTGGTGATGGTACATCGCTTGAGCttgagcaggcagcagcattggTGCAATCGTCGTCTGCATTGGTCGTTGAGAGGGATGCTTACGCAACTAGCTCTGCGTTGGTGGTTTTCGGTGAGGATACGCCGCAAATGGTCACAGAGGAGGTAATAACAGACGATTGGGTGCAGCATCAAGGCGAAGAGCGTGTTGAAATACCAGCCGAGCAAATACTCGGCAGCAATAGTTCGCATGTGTTGCTTGACATGGTGCAAGATGAGTATACAGCATTGCGGCCGTATCCGTGTGATTTCTGCAGCCGACGCTTTCGCAAGAAGGCCAGTCTCAATAATCATATGATTGCACACCAGAACGATCGGCCGCACTTGTGTAAATTATGTGGTGCACGCTTTTCGCGACGTGCCGAACTGATAAACCACTTCAAGGCACATGCTGAGCAACAATATGCCGACGAAACGGAGGTGCAAACAGAAGctGTCATTAAGTTCGAACCACAAAGACGCCAAATGGATGATCACTACTATGAGCAGGAatggcaaatgcaacaaacagcagcaggggCCGCAAGCGAGCAACTGCACAGTGAACGCGGTATGCCGCTTACGGAAAGTACCAGTGCCAATAGTTCCTCCGCATCTTCCACACTGGTCGGTACAACAGCGTCTACCTCAAACTCGgcgtcgacaacaacaatgaaaacgacGCGTGGTCGTGTCAGTCGCCTTAAACCCAAAGAAGATATTCAGTATATGGTTGTCGAACAGAAAGCTGCCCCAACGGATTTGGACTATTTGGGTTGTCAGGATTTGCAGGCAGCATCAGCGGCAGTTAAGTTAACACAAGACCATTCGCCGGCACACGAACCAAATTTTCCAATTATCGACGAGAGTAAACCGTTTGTCTGTCAGCAATGTGGTTTGGCGTTCGCACGTGAAAAGGCGCTGAATTCGCACGTGAAGAATCATCGCGTGGACTCGCCTTTTGAATGTAACCAATGCAACGAAATGTTTTGGGACACCAACAGTCTGCACGAGCATCAGAAATCGCATCAGTTTGAGGAGAGCAACTCTGAGTATGATCCCGCTGAAGCCGATGTCGATGCCGATGATACACAGAGCGATTCGGAATCAGAGCAGTTGTATGGTGAGTTTTATTGCAGCGAATGCGGCATCTCGTTTCATCGGCAAGATTTGCTACGTCGGCATGCCAAACAAcataagaaacaacaacatttgtcaacagcaacaaatgtgaCAGCTGACAATACTTTGGACAAAGATGCACAGCACTGCTGCAATACATGTGGTGAAACATTCGCTGAGGCATTGGATTTGCTAGCTCACGCTGAGATACATGCGCGATTCCCACCCTTCAAgTGCGTGCTCTGTGGTGAATCATTTTATGAGGAGCAAGCCATTAAACGACATTTGCACACACGGCACTCGCACGAGATGACTGCCAATTCGTGTATACTCTGCGGCAAAGAGTGTCGCGATCGCAAAGCTTTAATTAAACATGCCTGGGACCACTCGCGTGAGAAATGTCATTCTTGCTCCAAGTGCGGCAAGAATTTTCACAATAAGGCCCGTCTGAAGCGGCATATGGCTTCACATCGTGATAAATCGGTTGTTTGCGACGTCTGCCAGGAGGAGTTTCCGGACGGGCGCACGCTTTCCAATCATAGGCACTCGCACAGCACAAGCACCTCCGGTAAACTATTCCCCTGCCCCGAATGCAATAAGACATTCGGTTCGCGCAGTTCTCAGCAGATTCATGTGCGCATACACACGGGTGAACGTCCGTACGGCTGCAGATTCTGCTGGAAGGCTTTTGCCGATGGCGGTACGCTACGCAAGCACGAACGCATTCACACCGGTGAGAAGCCGTACGCCTGCTCTGTTTGCCCGCGTGCATTTAACCAGCGTGTGGTATTGCGTGAGCATATTCGCTCGCATCACTCTGGCAAGGACGCGAGTCGGGGTACTTACTATTGTACCGTTTGTGGCGCAGAGTTGACATCGTCGAATGAACTGATACAGCACCTCATACAACACAGTGACCTTAATACGGCAAAGCAGCGTCAACCGGTGTCGGGACCAAGAAAGTACAAACGCAGACGGAAGCTGCAGCCGCATGAGATAGCACATTTGCGCGCCGAGTGTAAATCTGAAAATTTTGGCTCAGATTTGGATATCTCCGATTTTGATATGGACACTGTGGATGATCTCTTGGGCATTAATACAGAGCCCACAAACAAATCAAGCAAacgtaaattgaaaaagacGGAAAGTACGCCAGCGAAACGTGCTACAACTAATAAGTCGAGCAGTAAAAGCACGAAAACGGAAGCAATACCGGAAACGTCACCAACGTCGGATGGTGTGacatacaacaataacaataacaacaatgcatgcGGAAAACAGCGTTACGACTCGACCAACTCCAGCAATTCGGATAAACTATGGGAAACGAAATTCCTACAAAGCGCTGCCAACAACCAAGAGGATTCCTATAAAACGCTCTTCAACAATGTGGAACAGGGTTTGCAGACTATTGACACACTGGTTGTGCACAGTCAAAAAACACGACGTGCTAAGCAGGCAAGCGACTCAGGATCACAGCGCACACAGCAAGTGCAACTCAAGACGGAAACTCACAAAGCAGCTGAAGTCAACGAAAGTAGCGGCAGCGGAAGTGGTGCAATGGCAATGTCAAATGGTGCCGTCACAAGATCacgtaaaaaagcaaatagtaAAACTCAAGCCAAGGTCAATTCGCGACCACGCATGATACACACTGAGAAGTGGCGTACGTCATCTACTCCAGAAGCTGGAAGCTCTGGCAGTCATAAGCGTACACGCTCTAAGACCTACATCACGCGCACCGAGACCACAAACATTGATTTGCTGGCAACCAAAGCCGGCACACTCGCTGCAAGTTCAACCAACATTGTCGATGACTATGAGATAATATCGCCTGCAACGCATCCGCCGAACCAGATCAGCTCCAGTCCGTTGCACATTAAACAGGAGCACGACCAGCAGCATTTGCACCACAATCAACACCATCAACAGAATCAGCTGCAACAAATTTACGAAGCGCACTTGTTGCTTGAGGCGTCCAGTCTGCGTAAGGAAACTTATGAGAAATTCAATCCGAGTATTGTAAATGACCTTGAAGAAATCCTACGTTCTCCACTCAAGTGCGAGCGTAATGTGCGACACCGCTTCATCAGTGAATCGTCTACAACGCCACAGTATCTGCCAGAGGATGAGCAGCATTTGATTAAAATCGAACCTACTTCGCCCGACTTGCGTGAGATCGTCGAGAGTCAACGTAATATGAGTGGAGCGGGCACATCGGCGCGTACCACTCAACTGCGTCAGATTTCAGGCAACAGCACGAGGAGTAACAAGTGTCATTTGCTGGACAACGAGTTGCAAGGCGGTCGCACCATGTCACGTGCCAAAGCCAATAAtgcgttgcagcagcagcaacaatcgcACAACAGCAAGGGACTAAGGGACAACAATAATGCCAACACTGCCAATGCAATGAAAGCTGCCAATGACGTGGCCAATGCGGCCGCCGCCTCGGCGTATCTCAACTACAGCGTCGATTCGTTCAATGTGGGAGTCTCGAGTGCGGGTGTTTCAAATGTGGATGTTACTTCGCAATACTTTTCCATATCGGAGGTTGTCTCCGCAGCCGATGCTACGGAggcagccgccgccgctgcgaaagcagcagctgccagtGCCAAACCAGAGCGCAAAGTGCGTCAGTTCGAGTGTGAAATGTGTTCGGCCGTCTTCTACGATCGGACCCAGCTGCTCgagcatgtacatatacacatttag
- Protein Sequence
- MNNQSYGGMQWIQHHATTSELKSAAVAAQLIADAQQLQVTEILDSNGDDDDDGNTAEYMMGDDDAADLDQMAATISKISAAENLIFMARDGQMVNEIISAQDSDTVVVSAGDGTSLELEQAAALVQSSSALVVERDAYATSSALVVFGEDTPQMVTEEVITDDWVQHQGEERVEIPAEQILGSNSSHVLLDMVQDEYTALRPYPCDFCSRRFRKKASLNNHMIAHQNDRPHLCKLCGARFSRRAELINHFKAHAEQQYADETEVQTEAVIKFEPQRRQMDDHYYEQEWQMQQTAAGAASEQLHSERGMPLTESTSANSSSASSTLVGTTASTSNSASTTTMKTTRGRVSRLKPKEDIQYMVVEQKAAPTDLDYLGCQDLQAASAAVKLTQDHSPAHEPNFPIIDESKPFVCQQCGLAFAREKALNSHVKNHRVDSPFECNQCNEMFWDTNSLHEHQKSHQFEESNSEYDPAEADVDADDTQSDSESEQLYGEFYCSECGISFHRQDLLRRHAKQHKKQQHLSTATNVTADNTLDKDAQHCCNTCGETFAEALDLLAHAEIHARFPPFKCVLCGESFYEEQAIKRHLHTRHSHEMTANSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVVCDVCQEEFPDGRTLSNHRHSHSTSTSGKLFPCPECNKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGKDASRGTYYCTVCGAELTSSNELIQHLIQHSDLNTAKQRQPVSGPRKYKRRRKLQPHEIAHLRAECKSENFGSDLDISDFDMDTVDDLLGINTEPTNKSSKRKLKKTESTPAKRATTNKSSSKSTKTEAIPETSPTSDGVTYNNNNNNNACGKQRYDSTNSSNSDKLWETKFLQSAANNQEDSYKTLFNNVEQGLQTIDTLVVHSQKTRRAKQASDSGSQRTQQVQLKTETHKAAEVNESSGSGSGAMAMSNGAVTRSRKKANSKTQAKVNSRPRMIHTEKWRTSSTPEAGSSGSHKRTRSKTYITRTETTNIDLLATKAGTLAASSTNIVDDYEIISPATHPPNQISSSPLHIKQEHDQQHLHHNQHHQQNQLQQIYEAHLLLEASSLRKETYEKFNPSIVNDLEEILRSPLKCERNVRHRFISESSTTPQYLPEDEQHLIKIEPTSPDLREIVESQRNMSGAGTSARTTQLRQISGNSTRSNKCHLLDNELQGGRTMSRAKANNALQQQQQSHNSKGLRDNNNANTANAMKAANDVANAAAASAYLNYSVDSFNVGVSSAGVSNVDVTSQYFSISEVVSAADATEAAAAAAKAAAASAKPERKVRQFECEMCSAVFYDRTQLLEHVHIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -