Snig016616.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stegana nigrithorax
Gene Symbol
-
Assembly
GCA_037044495.1
Location
JBAMBQ010005363.1:37882-40846[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7e-07 5.7e-05 23.4 0.8 1 23 206 228 206 228 0.98
2 16 0.00046 0.037 14.6 5.3 1 23 235 257 235 257 0.97
3 16 0.0036 0.29 11.8 0.8 2 23 292 313 291 313 0.97
4 16 7.8e-05 0.0063 17.0 2.0 1 23 400 423 400 423 0.98
5 16 9.6e-05 0.0077 16.7 2.2 1 23 460 482 460 482 0.98
6 16 0.0013 0.11 13.1 0.3 2 23 490 512 490 512 0.94
7 16 0.002 0.16 12.6 2.8 2 23 520 541 519 541 0.96
8 16 0.018 1.4 9.6 0.0 2 21 568 587 567 588 0.93
9 16 0.01 0.8 10.4 6.7 1 23 648 671 648 671 0.97
10 16 7.3 5.9e+02 1.4 0.5 1 22 678 699 678 699 0.90
11 16 0.008 0.64 10.7 0.1 2 23 709 731 709 731 0.95
12 16 0.0069 0.55 10.9 0.6 2 23 759 781 758 781 0.95
13 16 0.0007 0.056 14.0 0.2 1 23 792 814 792 814 0.96
14 16 0.0089 0.72 10.5 0.3 1 23 820 842 820 842 0.98
15 16 2.6e-07 2.1e-05 24.8 0.2 1 23 848 870 848 870 0.98
16 16 0.00034 0.027 15.0 7.0 1 23 876 898 876 898 0.98

Sequence Information

Coding Sequence
ATGCTGTCGTCTGGGGTTTGTAGAACCTGCGATGTACAGAAGATCAAAAGTCATAATTTGCACGCGCTCACATCAAAAGTGGAGAAGTGTAAAGCAAAAACGCTGGCGGATATACTCTTGGAGCTAGCAAATGTTGATGTTACTGCGGTGCAAAGCCACAAACTGCCGCAACATATGTGCGGGAACTGTACACGTAAACTTAAAAGCGCCTACGCATTTGTGCTGCAGGCGCAACTTGTCAATGAAAAACTTCTGGAGTGCTTACAGCAGCACTCGCCGGAAAGAATGAACTCGCtcaaaaaagaagagaatGATCAGTTAGACGAATTTTTTGCTGAAGGTCTAGTAGAAGTCAAGATGGAAATGTGCGAAGAACAGTCGCACACAATTGACTTATCCGGTCCTGTACTActacatgaaaataaattaacaagtTCCGGTGAAGATAAAGCAAGCGAAGGCAACAAAGATCCATTAGTAACAGTAGAAACGAATCAGAATGGCACACAGCAAGAATCATCAAGTTATGACGAAGCGGATGAACTACCATTGCAACAGTGTAAGCTGCTGCtcacaaagcacacaaaaacaatgaattcTGTGAATCTAAAGAATTATGTGTGCAATGACTGTGGTAAGACATATACGCGTCCGAAGTCCTTAgaattacataaattaaagcatCGTGCTAAAAGTGATTGGCACAATTGTAACTTTTGCGAGCGTCATTTTTATCGCGCTGATTTACTGCGCAAACATCTGAAAGTGCACGGGGAGCCGAGCAAGAAGAAACGTTCAGTTAACATTTGCGAACGCAAACAGGCCAAGTCGATAGACATCAATCTGTGCAAGCCCAATGGATGCAAGATCATACAATGCATGATTTGTCTAAGGAAGTATTCAAAATTTGCTGAACTACGCAGCCACATGCAGAACCATCCGGAAATAGTTACATTTGCTGAACGCACGGAATCTCTTCAGGAACTAGCCGATGCCTTCTATCCAGAATTGAAGGATATAGCAGAAGAAGATCAGTTACTTGCGTATATAAAGCGTGACCTCACAGCAGGCCATTATACTCCTTTTTATTCCATAACAAATGAAGCAGGCTATGAGCTTAGTTGGGACAGCACAGAGACTGAAAGCGATAACGAAATGGAAACAATAGAGCACACTCGTGCGAGCGAAACATTTCCTTACAGCTGTGAACTGTGTCAGGCTACCTACCGACGAAAGTATCAGCTTTATGAACACCAAAGATCCCAACATGTCTGGCAGGATGCTCCATATGAGTGCAGGCGATGCTATGCTCGCTTTTTAAGCCAAAAGCTATTGGATCATCATCATGAAACACTTTGTCGCAACATTGCAAATCGTTTCATTTGCCCGAAGTGCCCTCTGCGATTTCGTTGGCGGCACAATCTGAAAGCGCATACACGCACGCACCGCAACAAAACGCAAGCAGCTGAGTGTTCAGTATGCGAGCGCATCTTCGAGGATAAACGTTCTTTAACTATACATAACCGTCTGGTTCACGCAGACAAAGCAAAcatcttgccttgcctttggTGTAGTCGCAAGTTCTATAGTCGCCATTATTTGCTGAAACATTTGCAGAGGCATGGTCTCAGGGAACAGGAGGTTCCCCTGGCCGAAACTTTGGTGGCGGCCACATCTAAAGCGCATGGCAAGAAGCACATATCCTGTCGAGTTTGCAATGAGCAGTTCATGCGTATTGCTGAACTTCGTGTACACATGTTAATGGAACTTAAATTAGGTCTTACGACACAGCAAAGCTACGATTCCATGGCAAATTATTCGATTACCAATGCAGCCGGTTATGAGTTGCACATCGATGACTCCGAGACGGAAGACGAAAATGATGAGGATAATGCTATCACCAAGAATGCAATGATTAAAAAGCTTACCAGCGCGAATACCTATTCTTGCGACATCTGCCAGATAAAGTGTCGACGCAAATATAAGTTGTTTCAGCATCAGCACTCGTTACACTCCTTCGACAAGTTGCCTTATGCTTGtggaaaatgcatttttaagaGTGTTTCCAAGgAATTACTTTCGCATCATGAACGCACGCAATGCATGAATTCCGAAAAGTCCGAAGTTTGTTCAATCTGCGGCTATAAGTTTATGTGGCCGGAGAATCTCGAATTACACGTGCGCTTACAACACCCCAAATCAGATGAACAAAAAAGCTTAACATTTGTCAAACGCAAGCCAAAGTCCTCATCCGCCAATCCAGCAGAACCTTTACAGTGCCCACACTGCGAACGAACCTACCTACAGCAGGCTAGACTAAATATGCACATCAGAGATGTACACACCGATACGGATCGCAAAAAGAAGGATCGTTACTTGTGTTCACTGTGTGGACAGGCGGCACAATCGAATTCGAAACTGATCATACACATGCGCCGTCACACAGGCGAGCGCCCCTTTAAATGTGATCTCTGTGAAATGGCATTTACGGCGCGCAACGAAATGGTACTACACCGTCGCTTGCACACTGGGGAGCGGCCGTTTGTTTGCTCCATTTGTGGCAAAGGTTTTCCGCGGTcggaaaaactaaaaatacatatgctaATGCACAGCGGTTTGCGTCCACACAAGTGCAGCTATTGCGACATGGACTTTAGATACAAACACGATCTCAAACTGCATCTGAAGAAACACACCGGACAATTGAATCGGGCAGAAGCACAAAGTCTGTAA
Protein Sequence
MLSSGVCRTCDVQKIKSHNLHALTSKVEKCKAKTLADILLELANVDVTAVQSHKLPQHMCGNCTRKLKSAYAFVLQAQLVNEKLLECLQQHSPERMNSLKKEENDQLDEFFAEGLVEVKMEMCEEQSHTIDLSGPVLLHENKLTSSGEDKASEGNKDPLVTVETNQNGTQQESSSYDEADELPLQQCKLLLTKHTKTMNSVNLKNYVCNDCGKTYTRPKSLELHKLKHRAKSDWHNCNFCERHFYRADLLRKHLKVHGEPSKKKRSVNICERKQAKSIDINLCKPNGCKIIQCMICLRKYSKFAELRSHMQNHPEIVTFAERTESLQELADAFYPELKDIAEEDQLLAYIKRDLTAGHYTPFYSITNEAGYELSWDSTETESDNEMETIEHTRASETFPYSCELCQATYRRKYQLYEHQRSQHVWQDAPYECRRCYARFLSQKLLDHHHETLCRNIANRFICPKCPLRFRWRHNLKAHTRTHRNKTQAAECSVCERIFEDKRSLTIHNRLVHADKANILPCLWCSRKFYSRHYLLKHLQRHGLREQEVPLAETLVAATSKAHGKKHISCRVCNEQFMRIAELRVHMLMELKLGLTTQQSYDSMANYSITNAAGYELHIDDSETEDENDEDNAITKNAMIKKLTSANTYSCDICQIKCRRKYKLFQHQHSLHSFDKLPYACGKCIFKSVSKELLSHHERTQCMNSEKSEVCSICGYKFMWPENLELHVRLQHPKSDEQKSLTFVKRKPKSSSANPAEPLQCPHCERTYLQQARLNMHIRDVHTDTDRKKKDRYLCSLCGQAAQSNSKLIIHMRRHTGERPFKCDLCEMAFTARNEMVLHRRLHTGERPFVCSICGKGFPRSEKLKIHMLMHSGLRPHKCSYCDMDFRYKHDLKLHLKKHTGQLNRAEAQSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-