Snig016681.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005365.1:10892-13816[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.57 46 4.8 5.8 1 23 224 246 224 246 0.93 2 17 0.00025 0.02 15.4 1.1 1 23 253 275 253 275 0.98 3 17 0.042 3.4 8.4 0.1 2 23 313 334 312 334 0.96 4 17 0.00019 0.015 15.8 1.3 1 23 424 447 424 447 0.97 5 17 0.09 7.3 7.4 0.7 1 20 454 473 454 475 0.93 6 17 0.0031 0.25 12.0 1.4 1 23 484 506 484 506 0.97 7 17 1.5e-05 0.0012 19.3 1.0 2 23 514 536 513 536 0.96 8 17 0.00093 0.075 13.6 3.6 2 23 544 565 543 565 0.97 9 17 0.00078 0.063 13.9 0.1 2 21 592 611 591 612 0.93 10 17 0.013 1 10.1 6.2 1 23 661 684 661 684 0.98 11 17 0.014 1.1 9.9 0.2 3 23 723 744 721 744 0.95 12 17 3.5e-06 0.00028 21.3 1.2 2 23 780 802 779 802 0.95 13 17 0.0004 0.032 14.8 0.2 1 23 816 838 816 838 0.95 14 17 0.00025 0.02 15.4 2.1 1 23 844 866 844 866 0.99 15 17 2.2e-07 1.8e-05 25.0 2.4 1 23 872 894 872 894 0.98 16 17 0.00017 0.014 16.0 5.8 1 23 900 922 900 922 0.98 17 17 5.8e-05 0.0047 17.4 0.2 1 23 928 952 928 952 0.91
Sequence Information
- Coding Sequence
- atgacaacaaaggCTTCTAAAAAGGATACCCCACCGGCCTTATGCAGAACGTGTGGTGGCTCTCATGCTGTAGAACTCTACCCACTCTCATCATCAGCTTCTTTGAATACAGCGAAATCACTTGCCGCTCTGCTATTGGAGGTGTTTGGTATTGATGTTGATCAAGCTAAAGTAGACTATGCGGGGAAGCTGCCACAGCAGTTATGTGGGACGTGCACCCGCAGGCTTTGCGATGCCTACGAGTTTGCAGAGCAAGCAAGGAATACGAATGATAAGCTGTTAGCGCTATTGGCAGTATCAACGGTGGATAATGCCACTCCCGATTGCCTACAAGAGGCACCAATGGAAGTCTGTGCAGAGCAATTCGTCGATGTCAAGATCGAACCGGAACCTGGAGATGATTCCCTTACGGAGTTTCCCGAATCGCCAACGCGTGACCATTCCTCTGGCATGCCTATGGACGATGATGAAAGTGCAGACGAAAAGACTCTTGATCCATTAGTAATGATTGAAGTCGCAAAGGTCGGCATTAAAGTGGAACCTGAGGCCGTTGACAGATTTGAATCAAGCAGTGACagTGATCTGGACGATTTACCACTACAGTTTCGAAAAAGTAAACTAAAGCCAACACAAAATAGCAAGGACAACACTGAGATTAAAGTCAAGCGGTTCAAATGCGATAGCTGCCACAAATCTTTTCGTTGGCAACGTAATCTGGACTTTCATAAGCGTAAACATCTAGACAAGAGCAATTGGTATCCGTGCACACAGTGTAAACGTAAATTTTGGAGCAAAGATGGATTACGAGTGCATCTAAAAACACATTGCCAAAACGACGTTAGTGTTGCGAAAAAAGTGTCGGCGACACTATGCGAACGGAAGCAGGCCAAGGCGATAGACATTAATCTGTGCAAGCCGCACGGTTGCAAGTTGATACAGTGCATGATATGTTTGCAGAAGTATGCGAAAATAGCAGAGCTCCGCAGGCATTTAAACGCACATCCTCCAATCGAAAGTTTAACGGAACGCCAGGAATCGTTGCGTGAGATCGCCGAATCATTCTACGCCGACTTCGACCTGGACACAGTAACAGAGCTCCAGCTGTTGGATCGCATACGCAAAGACCTTGCTGCAGGTAAACATGGTGCGTTCTACTCGATCACGAATCAATCCGGCTATGAACTCAGTTTGGATAGTTCTGAGACTGAAAGCGACTGGGATGAAGAGGCAATGCACTCTTATAAAACAGATTCTGTTACTGGGAGCAAGTACGTTTGTGAACTGTGCAAGGCTGGCTATCGGCGCAAATACCAATTGTTTGATCATcaaaggcagcagcacgaCTGGCTGGATGCGTATCACATCTGCCGGCGTTGCGATGCGCGTTTCATAAGTGAACAGATGTTGCAACATCATTATAGCGCGCAGTGTGCGAATGCGCAGAAGCGATTCATCTGTCGGAAGTGTCCATTGAGATTCCGTTGGAAGCAGAACCTTAAGGCACACTATCGCGATCATCCACGTAATGTACAGGTGCTCGAATGTACGGAATGCCAACGCAGCTACAAGGACAAGAAGTCGTTCACGATACACATGCTAACCGTCCACACAGACGAATCGAAACTGTTGCCCTGTCATTGGTGCAGTCGCAAGTTCTATCGTCGCGACTACATGCTAAAGCATTTGAAACGACATGGACTGCGAGAGCGCGATTTGCCATTGGCCGAAACTCTGATTGAAGCCACGGCTAAGCCGAATGGCAGTAAGCGAATTAGCTGCAAAGTGTGCAATTTGAGTTTTGAACGAATGTCTGAGTTGCGTTCACATTTGATAATAGAACTGAAGCTCGCTGTGACCCTTCATAAGAGTTACGATTCCATGAGCAATTATTCAATAACCAACGAAGCAGGTTACGAAATGCACATTGACGATTCGGAGACAGACGATGATCTGTCGGGCGCTGCAAAAATGCACATACCTTATACGTGTGAGATTTGCCATGTCCAGTGCCGCAGGAAATTCGAGATGTTCCAACACCAGCGGTCCATGCATGTTTTTGAGCAAATGCCACATACCTGCGACAAGTGCATATTCAAGAGTGTGTCCAAACCGATATTGGAACACCATCGACGCACACAGTGTCTCAATGTGCAGAAGCAACTCGCTTGTACACAATGCAGCTATAAATTTATGTGGCCGGAGAATCTTGCGCAGCATATGCGATTGCAGCATAAATGCTTCATAAACCCCGAAGCTACCGCTCCAGCGAGTACAACCTCGCAAGATGCTGTGCGACCAGATGCTGGCGCAGACGTCGCCGCCGCACCTCAGTTGCTTCAATGCCCGCATTGCGATCGCACTTATGTGCAACAGTCCCGCCTTAAAAATCACATTCGCGATGTACACACAGAAGGTGGCCGCAAGAAAAAGGAAGGCGAATGTAAATTCTTGTGCTCACTTTGCGGCCGAGATGCTCAATCCGCATCTAATTTAGTGACACACATGCGCCGGCATACTGGTGAGAAACCGTTTAAGTGTGATATGTGCGACATGGGATTTCCACGTCATAACGAAATGATACAGCACCGTCGGAAGCACACGGGTGAGAAACCGTATCATTGCACTGTTTGCGGCAAAGACTTTGCTCGCTCCGATAAATTAAAGCGACACATGCTAACGCACAGCGGCCTGAAACCGTACAAGTGCACCTTTTGCGAGAAGTGCTACCGGCAGTCGAAGGATTTGAAATTGCACTTGCAACAGCATACAGGGGAGACGCCGCATGAGTGTGGCATCTGCGGCGAGCGGTTTATACAAAGTGTGGCGCTCGAGAAACATCGTATGATGCGTGGCCACTTCGACGAGGTGCATTAG
- Protein Sequence
- MTTKASKKDTPPALCRTCGGSHAVELYPLSSSASLNTAKSLAALLLEVFGIDVDQAKVDYAGKLPQQLCGTCTRRLCDAYEFAEQARNTNDKLLALLAVSTVDNATPDCLQEAPMEVCAEQFVDVKIEPEPGDDSLTEFPESPTRDHSSGMPMDDDESADEKTLDPLVMIEVAKVGIKVEPEAVDRFESSSDSDLDDLPLQFRKSKLKPTQNSKDNTEIKVKRFKCDSCHKSFRWQRNLDFHKRKHLDKSNWYPCTQCKRKFWSKDGLRVHLKTHCQNDVSVAKKVSATLCERKQAKAIDINLCKPHGCKLIQCMICLQKYAKIAELRRHLNAHPPIESLTERQESLREIAESFYADFDLDTVTELQLLDRIRKDLAAGKHGAFYSITNQSGYELSLDSSETESDWDEEAMHSYKTDSVTGSKYVCELCKAGYRRKYQLFDHQRQQHDWLDAYHICRRCDARFISEQMLQHHYSAQCANAQKRFICRKCPLRFRWKQNLKAHYRDHPRNVQVLECTECQRSYKDKKSFTIHMLTVHTDESKLLPCHWCSRKFYRRDYMLKHLKRHGLRERDLPLAETLIEATAKPNGSKRISCKVCNLSFERMSELRSHLIIELKLAVTLHKSYDSMSNYSITNEAGYEMHIDDSETDDDLSGAAKMHIPYTCEICHVQCRRKFEMFQHQRSMHVFEQMPHTCDKCIFKSVSKPILEHHRRTQCLNVQKQLACTQCSYKFMWPENLAQHMRLQHKCFINPEATAPASTTSQDAVRPDAGADVAAAPQLLQCPHCDRTYVQQSRLKNHIRDVHTEGGRKKKEGECKFLCSLCGRDAQSASNLVTHMRRHTGEKPFKCDMCDMGFPRHNEMIQHRRKHTGEKPYHCTVCGKDFARSDKLKRHMLTHSGLKPYKCTFCEKCYRQSKDLKLHLQQHTGETPHECGICGERFIQSVALEKHRMMRGHFDEVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -