Snig016617.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005363.1:41082-44045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.6 5.3e+02 1.5 0.1 3 17 64 78 63 79 0.91 2 17 7.5e-07 6e-05 23.4 0.8 1 23 225 247 225 247 0.99 3 17 0.076 6.1 7.6 0.7 2 23 282 303 281 303 0.94 4 17 0.13 11 6.8 2.3 1 23 391 414 391 414 0.93 5 17 0.0099 0.8 10.4 0.9 1 22 421 442 421 442 0.95 6 17 0.072 5.8 7.7 5.0 1 23 451 473 451 473 0.94 7 17 4e-05 0.0032 17.9 0.2 3 23 482 503 480 503 0.96 8 17 0.00031 0.025 15.1 3.2 2 23 511 532 510 532 0.97 9 17 0.0047 0.38 11.4 0.0 2 20 559 577 558 579 0.94 10 17 0.0064 0.51 11.0 2.1 1 23 635 658 635 658 0.97 11 17 0.0058 0.46 11.1 0.0 3 23 697 718 695 718 0.94 12 17 0.0006 0.048 14.2 0.8 2 23 750 772 749 772 0.95 13 17 0.00028 0.023 15.2 0.2 1 23 787 809 787 809 0.95 14 17 3.4e-05 0.0027 18.2 2.5 1 23 815 837 815 837 0.99 15 17 4.2e-08 3.4e-06 27.3 0.5 1 23 843 865 843 865 0.98 16 17 5.9e-06 0.00048 20.5 2.9 1 23 871 893 871 893 0.98 17 17 0.00016 0.013 16.0 0.5 1 23 899 923 899 923 0.91
Sequence Information
- Coding Sequence
- ATGACTAGAAAAAAAGAACCCGCATTGCTTCAGTGCCGCACTTGCGGCAGCAACAATCCGAACAATGAGTACAACGAACTTAAGTcgttcacaaaaaaatttccaacaaAAACACTGTGGGACTTATTACTGGAAGTGACCAGATTCGaaGCGGCTTTAGCTTGTGTAGATCAACTGCCCTTGCAGTTATGCACAGTATGTACACGTAAATTGAGGAATGCGTACGACTTTACTATGCAGGCACGAAAGACACAAATTAGACTGCTTGCTGAGTTgaacgcaaataaaaacgaaaccgaaaacaaaaaggagaCCGTAGTTACAGCATCCGAAAGGATAGCCACAAACAACGAAGCAGCTAATATAGACTGCCTGCAGGAAACGTTAATGCCGGCGTGTGCAGAAATAGTGGAAGTAAAAATCGAAGCCGAATTAGAAGCAACCACGTTACAAGGCATTGAACTTGGCACGCTAAAAGAGCAAGCACTACCTAATCAAGGAAACGTAGATCCCTTGGTAATGGGCAGTGAAGAAACCAAATTAGAAGAGAAAAGCGAATATAGTCTAAGTGAAGAtgATGCTGATGATCTGCCTTTGGCTCAACGTAAAGCAATACACTCTAATTTACTGGCAAAGCCTACTAATGTAACGCACGAAGGTGCAATACATCCTTATAAATGCGAAGAATGTGGCAAAGTATATTTGCGCCCAAAAAACCTCATGAAACACATGAAATCGCACAATGAGAAGGGAAAACCAATGCGTTCGCAGAATCTCTGTGATCGCCGCAAGGTGAACAACATGGATGTAAATCTCTGCAAACCGAATGGCTGCAAGCTAATACAGTGCATGATTTGCCTTcgtaaatttaacaaatttaatgagCTGCGTCTACATTTGGTGCAACATCGTGCTGGTACTTGTTTTGATGACCGCCAAGAACCATTAGAAGTAATTGCCGAATCTCTTTATGCGCACATGAAGGCTGTTACAAAAGAGCAATTGGTTGCACGTATGCGTAAGGATTTAATGACTGGTAATTACGCACACTTTTACTCTATAACAAATGAGGCCGGCTACGAGCTTAGCTTAGACAGCTCTGAGACTGAGAGCGAGAACGAACAAGAGGTACTGGAGCAAAATAGTAAACCtgaactgcagcagcaaaaatatgtgtgtgagttATGCCTTGCTTGTACGCGCCACAAATATGAACTGCTGGAGCATCaagtgcagcagcacagcTGGTCGGAGGCGCAGTACGACTGTGGGCGTTGTAATGCACGCTTTGTGTCTAGCGTGCTCTTGGAACACCATCACAAAACATTGTGTAAGAATACTCAAAAACGTTTTCTCTGTAATAAGTGCCCGCAAAGGTTTCGCTGGAAGCACAACTACAAAACGCATACCAAGGAACACCGTAGTAAGAAGGAAACATTGGCGTGTATGGAGTGTGATCGCACCTACGATGATAAAAAATCGTTGACAATACATATGCTGACCGTCCACACAGACGAGTCGAAGCTTTTGCCCTGTCATTGGTGCAGTCGCAAATTTTATCGTCTTGATTATCTCTACAAACATCTGAAGCGACATGGATTACAAGAAAAGGACATTCCATTGGCAGAAACTCTCTTAACGGCGAGCGCCACTGCACATGGCACGAAGCATATTGAGTGCAAAGTTTGCCAAATGGTATTTCCACGTATAGGTGATTTACGGCAGCATTTAGTCAAAGAGATAAAGGCGCCTACGAGAATGCATAAGCACTATGAGTCTATGGTCAACTATTCGATTGTCAACTCAGCTGGATATGAACTGCATATAGACGATTCAGAGACGGATGATGAAAAGCTGGACATGACAATTGAAAAATCAGTAGGAGGGAATAATTCAACAGCTTACACCTGTGAAGTGTGCCTCGTTCAGTGCCGTCGAAAATTTGAATTAATGCAACATCAACGTGCCATGcactgttttgtttcattgccaCATGCCTGCGATCAATGCATCTTCAAATGTGTCTCCAAAGAAATACTAGATCATCATAGACGCACACAATGCGCAAACACAGAAAAGCGGTTGGCGTGCCCACAATGTGGTTACAAATTTATGTGGCCAGAGAACCTAGCGTTGCATATGCAACTACAGCATGCAGTGACAACAAAGGACTTGACGTCAATGCCCGGAGCGCAAAGAAGCGTAATAGTTGCTGGCACGGCGACCAACAAGTCTTCTAAATTGTTGCAATGTCCACACTGTGATCGCACATACCTTTTACAGTCTTATTTGAATAACCATATTCGTGATGTGCATATCGagggcaaacaaaaaaaacgtgaCGCTTTGGACCGAAAATTTCTTTGTTCGCTTTGTGGCCTGGAGACTCAAACCTCGGCCAACTTAATCATACACATGCGTCGGCACACGGGAGAGCGACCATTTAAGTGTGAAGAGTGCAACTCTAGCTTCATCAGACACTCGGAGTTGATCATACATAAGCGACGGCATACAGGAGAACGCCCGTATCCGTGCACAGTATGTGGCAAGGATTTTGCTCGCTCCGACAAGCTCAAGCGACACATGTTGACGCACAGTGGCCTAAAACCCTACAAATGCACCTACTGCGATAAGTCTTACAGGTACTCCAAAGATCTCAAGTTGCACTTACTGCAGCACACCGGCGAGACTCCGTTTGAATGTGGCAATTGCGGCGAGCGTTTCATGCAGAACACGGCGCTCGAGAAACACCGTATGATGCGCAGGCATTTTGATACTAGTAAATAA
- Protein Sequence
- MTRKKEPALLQCRTCGSNNPNNEYNELKSFTKKFPTKTLWDLLLEVTRFEAALACVDQLPLQLCTVCTRKLRNAYDFTMQARKTQIRLLAELNANKNETENKKETVVTASERIATNNEAANIDCLQETLMPACAEIVEVKIEAELEATTLQGIELGTLKEQALPNQGNVDPLVMGSEETKLEEKSEYSLSEDDADDLPLAQRKAIHSNLLAKPTNVTHEGAIHPYKCEECGKVYLRPKNLMKHMKSHNEKGKPMRSQNLCDRRKVNNMDVNLCKPNGCKLIQCMICLRKFNKFNELRLHLVQHRAGTCFDDRQEPLEVIAESLYAHMKAVTKEQLVARMRKDLMTGNYAHFYSITNEAGYELSLDSSETESENEQEVLEQNSKPELQQQKYVCELCLACTRHKYELLEHQVQQHSWSEAQYDCGRCNARFVSSVLLEHHHKTLCKNTQKRFLCNKCPQRFRWKHNYKTHTKEHRSKKETLACMECDRTYDDKKSLTIHMLTVHTDESKLLPCHWCSRKFYRLDYLYKHLKRHGLQEKDIPLAETLLTASATAHGTKHIECKVCQMVFPRIGDLRQHLVKEIKAPTRMHKHYESMVNYSIVNSAGYELHIDDSETDDEKLDMTIEKSVGGNNSTAYTCEVCLVQCRRKFELMQHQRAMHCFVSLPHACDQCIFKCVSKEILDHHRRTQCANTEKRLACPQCGYKFMWPENLALHMQLQHAVTTKDLTSMPGAQRSVIVAGTATNKSSKLLQCPHCDRTYLLQSYLNNHIRDVHIEGKQKKRDALDRKFLCSLCGLETQTSANLIIHMRRHTGERPFKCEECNSSFIRHSELIIHKRRHTGERPYPCTVCGKDFARSDKLKRHMLTHSGLKPYKCTYCDKSYRYSKDLKLHLLQHTGETPFECGNCGERFMQNTALEKHRMMRRHFDTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -