Snig009112.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010003288.1:11744-14728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00011 0.0085 16.6 1.0 2 23 140 162 139 162 0.95 2 14 0.008 0.65 10.7 6.1 2 23 176 198 175 198 0.96 3 14 0.0075 0.6 10.8 0.9 3 23 323 344 322 344 0.95 4 14 5.3e-05 0.0043 17.5 3.3 1 23 353 376 353 376 0.98 5 14 0.023 1.9 9.2 9.9 2 23 538 559 538 559 0.97 6 14 5e-06 0.0004 20.8 2.9 1 23 565 588 565 588 0.95 7 14 6.6e-05 0.0053 17.2 0.6 1 23 593 616 593 616 0.97 8 14 1.8e-05 0.0014 19.1 6.2 1 23 634 656 634 656 0.97 9 14 4.3e-05 0.0034 17.8 1.6 1 23 661 683 661 683 0.98 10 14 2.4e-05 0.0019 18.6 1.5 1 23 689 711 689 711 0.96 11 14 2.2e-05 0.0018 18.8 0.7 1 23 717 739 717 739 0.98 12 14 4.7e-07 3.8e-05 24.0 1.3 2 23 746 767 746 767 0.97 13 14 2.5e-08 2e-06 28.0 1.1 1 23 773 795 773 795 0.99 14 14 0.05 4 8.2 2.1 1 23 800 823 800 823 0.92
Sequence Information
- Coding Sequence
- ATGGATCAGGCAAAGCTTGACGCAGAGCGCATTTGTCGTGTTTGCCTGTGTGATCAAAGCGAACTCTTCTTAATTTACGATGAGGCGCCCATCGAACAGGGTATGAATATAGTACAGATACTCAATGAGTGTACCCAATATTCAGTGGAACGTTATGACAAGATGCCCCACCAGATGTGTGCTAGATGCATTGAAGAGGCTCGTGCAGCTTATCGCTTCAAGCGTACAGCGGACGCAGCGTACCGCACACTGGTTGGACAGTTAGGCCGTATgccgcataaaaataaaagcaattacaTTGACAACAGCACTCAAACCGAACAAAGTTCATTATACCCTTGCGAGGCGTGCGATGAAAAACTAATTTGCTCCAGTGTAATACGCCACCACCGGCATACGGAGCAACAGAATgagcttaaatgcaaaatctGTGGCAAGGCTTATAAGCAGCTGCGTTTTTTACAGCTCCACTTGCAGCAGACACATCAACAGAAGTTGCAGTCAAGCTTAGCGACTAATATCCAGCAATGTAGACAATGTCTTCGCCGTTTCACGCGTCGTGATCACTTTCTGCGGCACATACACAGCATACATCGACAACCTGAAAACACAGTAGGCAAAGAGtggcaattaaataaagagCAAGCTGAATGCGACCTCGTCTTAGAAAAAACTTCTCAGGTTCAGTCACTGTTAGAGGAGCCAGAGATGATCGTAATGACAGATAGAGGCAATGCTTATGTAGATGCATATTGGACTGATGAGCAGGATGATGTGGAGCGAATATCTGAATGCGATATAAATCCGATTTCCAGTGATGATGAATTGAAACCGGGAACAGAAATTACGCAAAATCTTTGGCTCGACGTGGAACCGAATATTAATATGGCCATAGTGGACGAAAGTAATCAGATTGTCACTGATTGTGACCAAATGCAATCGCCGCTGTGTCGCAGCGAAAGATGCTGTTCGATATGTGAAACTGAATTTCAGAGAATTGAGGAGCTGCGTCAGCATATTGAAAGGGAGCACAGTAACACCGCTTTGTTGGCCAAATACCAATGTAAGATGTGTCTTAGAAATTTTCGGCGAGGAAATCATTTACAACGACACATCCAAACGGTGCACAATTTATCGCGGGAGGGTGAAGTCCCTTCTGTTGATGCAAATAAGGAAATATGTGCTGACAGTTCGTTGAAGCTAGACGAAGATAATCAGCTCCGTGAAAATACCCAGATGAACAAGAGTGCGAgcaatgaagcaaaaaatgaTGAAGACTTATTCCACATGTCATGCGAAGTAGATAAGAATTATGCCGATGCTGTGCATATAAAGCtggAATCAATGTCTTCTGAGTTGAACGCGGCAACGACATCGTTCACAGATCTCTCAAgtattgcattaaaatgtgAGCCAATCCAAGATAAGACAGAGTCGAAACAAAAGATTGAAGAGTTTTCCTTAGCTACTGAACCCAATAGCGAAACAGTTATTGACGGCGAGAACCAAATGCCTCTGAAACGGGATAGACCCAAGGTAACGATCGTACGTGAATACTTGCAAAAGAAACGTTTGCCGCGCAGAAAAAACCTTGAGACAAATCTTGAGAACCGCTGCGACCAGTGCCAACGTACTTTTTCACGGCATTGTCATCTTTTGCGCCATAAGTTGTCTCACTTAGAACAGAAGCCGCATGCTTGTCCACATTGTTCAAAAGCATTCGCACGCAGTGACCACCTTAAAGCACACGTGCAAAGTCTGCATGGCAGCAAGGAGCATAAGTGCAGGCTCTGCGACGCTGCGTTTGTGCGACGAGAAGCCTTGGAACGTCATATACTAAGTAAGCACGACGGTGTTGGCCTTGAAGTAAGCGGCGATTGCGGCACGGAATCGAAACTGCACTCGTGCGATTACTGCAAAAAGAAGTTTACGAGCCGCAGCTATCTCCGCAAGCACACTTTAATGCACACCGACATGCTATATGCATGCAAGAATTGCGACAAAACATTTAAGGAACGGGCGTTTCTACGTGAACATGAGAAAACTCACCAAGCAGAACGAAACTACTTGTGCTGCATATGTGGCGATAGCTTCGCGCGCAATGACTACTTGCGTGTGCACATGCGTCGGCACAACGGCGAGAAGCCGTACAAATGCAAATTCTGTGGCAAGGGTTTTCCACGTGCTACCGACGTCAAAGTACACGAACGTTATCATACTGGCACCAAGCCCAACGTGTGCACACTGTGCGGCAAAGGCTTTCATCGTGCCTATAATCTTACTATACACATGCGCACGCATACTGGAGAACGACCGTACAAGTGCGATCAGTGTCCCAAGAGTTTTACCCAAAGCAACGATCTGAAGGCGCATATAAGGCGTCACACCGGTGAACGGTACAAGTGCAATGAATGCGATGCCTGCTTCTTGCAACTCTATGCTATGCGTCACCATGCACTTAATGCGCACGGCACGCATATTAAATCGAAAACTGGGCGGCTGCAGCGGACGGGTTTGTATGATGATGTGCACCTTCAACCTTTGATCACTACGGTGTTGGTCACACCAACACACCAAAGCCACGAGAAAAATGAATCATTACAATCTTCTCGTTTGCTGCGTCCATTGCCACGCAGTCATCAATCGCAAGAGGCACTTAACTTCCCAACAAAGTTCATTGAGTCGGACAATATATATTCGCCGACTACCACACCAGCAGCGAAAACAACCGCAGTGAATGTGCCTGGGAACGACTATCTAAGCTCCTACGTAGATCTCTCCACCGCTATTGTACGTTTCCAGGAGCCGCATAATCATgcaccgcaacaacaacagcagcagccacagaagCAGGAACAATAA
- Protein Sequence
- MDQAKLDAERICRVCLCDQSELFLIYDEAPIEQGMNIVQILNECTQYSVERYDKMPHQMCARCIEEARAAYRFKRTADAAYRTLVGQLGRMPHKNKSNYIDNSTQTEQSSLYPCEACDEKLICSSVIRHHRHTEQQNELKCKICGKAYKQLRFLQLHLQQTHQQKLQSSLATNIQQCRQCLRRFTRRDHFLRHIHSIHRQPENTVGKEWQLNKEQAECDLVLEKTSQVQSLLEEPEMIVMTDRGNAYVDAYWTDEQDDVERISECDINPISSDDELKPGTEITQNLWLDVEPNINMAIVDESNQIVTDCDQMQSPLCRSERCCSICETEFQRIEELRQHIEREHSNTALLAKYQCKMCLRNFRRGNHLQRHIQTVHNLSREGEVPSVDANKEICADSSLKLDEDNQLRENTQMNKSASNEAKNDEDLFHMSCEVDKNYADAVHIKLESMSSELNAATTSFTDLSSIALKCEPIQDKTESKQKIEEFSLATEPNSETVIDGENQMPLKRDRPKVTIVREYLQKKRLPRRKNLETNLENRCDQCQRTFSRHCHLLRHKLSHLEQKPHACPHCSKAFARSDHLKAHVQSLHGSKEHKCRLCDAAFVRREALERHILSKHDGVGLEVSGDCGTESKLHSCDYCKKKFTSRSYLRKHTLMHTDMLYACKNCDKTFKERAFLREHEKTHQAERNYLCCICGDSFARNDYLRVHMRRHNGEKPYKCKFCGKGFPRATDVKVHERYHTGTKPNVCTLCGKGFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCNECDACFLQLYAMRHHALNAHGTHIKSKTGRLQRTGLYDDVHLQPLITTVLVTPTHQSHEKNESLQSSRLLRPLPRSHQSQEALNFPTKFIESDNIYSPTTTPAAKTTAVNVPGNDYLSSYVDLSTAIVRFQEPHNHAPQQQQQQPQKQEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -