Snig016618.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005363.1:44494-49312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0007 0.056 14.0 0.7 1 23 263 285 263 285 0.97 2 27 0.0015 0.12 13.0 3.5 1 23 291 313 291 313 0.97 3 27 0.00043 0.034 14.7 0.2 1 23 435 458 435 458 0.93 4 27 0.065 5.2 7.8 0.4 1 22 465 486 465 486 0.93 5 27 4.3 3.5e+02 2.1 0.3 1 21 495 515 495 516 0.93 6 27 0.51 41 5.0 3.9 1 23 556 579 556 579 0.97 7 27 0.0011 0.085 13.4 1.2 1 23 662 685 662 685 0.96 8 27 3.4 2.8e+02 2.4 1.6 2 21 694 713 694 714 0.90 9 27 0.014 1.1 10.0 0.1 1 23 723 746 723 746 0.91 10 27 0.0013 0.11 13.1 0.4 2 23 762 783 761 783 0.96 11 27 4.6e-05 0.0037 17.7 0.9 1 23 790 812 790 812 0.98 12 27 5.7 4.6e+02 1.7 2.1 2 23 841 862 840 862 0.95 13 27 2.1 1.7e+02 3.1 1.5 1 23 949 973 949 973 0.87 14 27 0.045 3.6 8.3 0.1 1 21 980 1000 980 1001 0.94 15 27 0.00089 0.071 13.7 1.2 1 23 1010 1032 1010 1032 0.97 16 27 3.9e-05 0.0031 18.0 1.6 1 23 1048 1070 1048 1070 0.98 17 27 2.9e-05 0.0023 18.4 1.2 1 23 1077 1099 1077 1099 0.98 18 27 0.0016 0.13 12.9 0.0 3 21 1127 1145 1125 1146 0.94 19 27 0.0013 0.11 13.2 4.5 1 23 1198 1221 1198 1221 0.96 20 27 0.24 19 6.1 0.6 2 22 1229 1249 1228 1249 0.96 21 27 0.4 32 5.3 3.0 2 23 1259 1280 1258 1281 0.92 22 27 0.0023 0.18 12.4 2.9 1 23 1309 1332 1309 1332 0.98 23 27 5.4e-06 0.00044 20.7 0.2 2 23 1367 1388 1366 1388 0.95 24 27 0.0053 0.43 11.3 3.3 1 23 1394 1416 1394 1416 0.99 25 27 7.7e-07 6.2e-05 23.3 3.2 1 23 1422 1444 1422 1444 0.99 26 27 1.9e-07 1.5e-05 25.2 2.4 1 23 1450 1472 1450 1472 0.99 27 27 0.001 0.084 13.5 0.1 1 22 1478 1499 1478 1502 0.90
Sequence Information
- Coding Sequence
- atgcattCCGATAAGTTGGAAACAAGTGCGTTATGCAGAACCTGTGAAGTTGCGGGTGGTGTGCAGTTGATTAAAGCGTCGTCGCGCAATGAGAAACATCCGGAGAAGACCTTGtccgacatgcttttggattTGGCTAAGATCGATTTAAGCGCCGAACATGCTGAGTCATTGCCACAACAGTTGTGTGTTACTTGCGCGCATAAGCTAAAGAACGCCTACGATTTTGTTCTGCAGGCTCAGCAGGTGAATCAAAAGTTAGTTGCCAGTTTGCTAGAAGTAAGCAAGGAGAATCTGGATTGCCTGCTGGAGGCGCCGATAGATATAACGTCGCATGAATTTCtgcaaattaaaatggaaGTCGATGGCAGTGAGGAGTCGGCGacgacagcaacggcaacaacataCTTTACACCAACTGCTGTTGAAGCAGCTGATGACGCTGAAATGAACACTGAAAGTGGAACATTGAAGGATGAGCTTATCGATAGTGACAATGAAGACGATTGGCGCTTAAGTGATGATGCTGGTCGTGAGCCACATTTAGTCGATAAGTGTAGCAGCAGTGGTGAGGGCATTGACAAAGCCCATCTATCTGGAAGTAGACGTTTACGCAGAAGTATGCGCAAGCCGCCTGGTAAACGAAAGCCTGGCAAGCAGCGAAAGATTGAAAACGAGACCGCAAGTGAGGAtATTAGTGAATCAGAAAGATTACATGTGCCTTTGAAGCCACGAAGGCGCGGCCGTCCACGCAAGTCTGAGCGCAATGCAAACAACGAAGGACGTTATGTATGCGATATTTGTGGCAAGACTTTTGCTTGGCACAAAGACGTACAACGCCATGCCAAAAGTCACCGAACTGAGGCTAGTTTCGTTTGCGATTGCTGCGGTAAGGGTTTTCAACGTAAGGATAAATACATGGATCATATGCGCAAGCATAAAAGTGGCAATGACGTGAAGGCCAAACGTCGCACGAATTTTAGCGGGCGCCTCTACTCCACAAAACGCTTTAAGCTACTCGAGTGCCGCCTCTGCGCAGTTACATGCGGTAAGATGCAAGATTTGTTGGACCATTTGATGCTGCATAGGAACATCGACACATTAGAGAATCTCACCATGGATAACGTAGTGATTAAGGAATTCTTTGGCAATGGCACAATAAAACTGAATGAAGTCAAAGAGGCTGTCAGTGAAGATATTGCGGCGTTGTCTCTGAATAAATACTGCCAAGTGTTAAATCAATATGGCTATGAGATGAGCATCGATGATTCGGATGAGGAATGCACCACTGCGGACGTTAAGTACGTTTGTGAGTTGTGCGGTGAGAACTTTTCGCGCAAATATCAGATCTTGGCTCATGCGCAGGAGAAGCACAAGCACGATACGCTGCCCTATCGCTGTAATGTTTGCAAATTGGTTTTCGCCTCGGAGCTATTTTACGAGCAACACACGAAGACGCAATGTCGCAATCGAGATAAGAAATACAAGTGCATGCGCTGTCCGGGCAAGTTTATGTGGGCCGAGAATCTTGAACAGCATCAATGTGCTGATAACGTTAAGCGTCTGAAGAACTTCGACGATGACAAGGATATAACTGAGTCCAAAGAAGATACTGAGGAATTGGAGCTGAGTTTTGCGTTGCAAAGTGGTGGCGAAGGTAACAAGTATAAATGTTGCCTATGCAATAGTACGAATTTTGGAAGGCTCAAGCAACTGCGCAAGCATCTATTATTGCATCAAGATGGTCACACTCAGGTGGACGTCGTGAATGGTGCATACTTCAAAAGCTATCATCCGACAGGCTGTGCGGGTCGCGAAACTGAGCTTACTATGCAGATTGCCACTGACTTTGCCACGCAAGATTATGCGCGCTACTATGCTGCAATAAGCGTCAACGGAGTCGAATTAGATTTGTATGATTCTGAGTCGTCTACAGATAATACAGATGATGAAGTCGCAGATGAGCCGGGAGTGAAGTCCCTTTATATTTGCGGCATATGTGGCGAAGCGTGTCAACGCCGTGAACATTTGCTTAGCCATCAGGAGTCACAGCACTCTGACCTCCAGCAGTTGACGAATGTGTGTCAGAAGTGCCGTAAGCAGTTCGTCTGTACCGAATTACTAGAGCAGCATCAGTTGCGTGATTGTTTGAATCGACATAAGCGTTATCAGTGCGAAAAATGCGATGAACGTTTCGTGTGGCTCGAGAATTTGGAGTCGCACAACATAATACGACATAATATTTACAGTGAAAAACCTCAAGACAAATTAGCCAAGAAACTGAAATGCGACTTGTGCGAGAAAACGTTTATTTGGCCAAAGGACTTGACGCGCCACAAACGCGCACATTTGCCCAATACGGAAAAGTACGAGTGTCCCTATTGCGAGCGGAAGTTTTTGCGCAAGGATAACATGCAGTCGCACATCAAGGTGCATAGCGAGGAAGCGAAACGCTGCAAACCAATTAAGGTGAAGAACGTTGACGCACATCTTTGCAAACCACATGGCTACAAGCGCATCCAGTGCATGATCTGCCACACAAACCATCGCAAGATTGCCGATCTACGTATGCACTTGGCCACGCACAGATACGGAGTGCAATTTTCTGCTGATGGTGATACCATGGAAGCCATTGTACAGGCGCTTTACCCGGATGAGGAATTGCACCTGAAGCAGGAAGAACTGATCGAACGCATCATGGAGGATGTGACGCGGGAGCAGTACGATCGTTTCTACTCGATCACTAATGAAGCGGGCTACGAGCTTAGTCTGGACAGCACCGAAACTGAGACTGATTCTGAGACGGAATACGAGAGTAACACCACGAAAGCAACGTTCCACAAATATATGTGTGAAGTTTGCCTTTCGGTTGGCTTCCACCGCAAATACCAACTTTAtgcgcatcagcagcagcagcatcaatgGCAGGAGGCGGCCTACTCATGCGCTCTGTGCCAGGCACGCTTCATCAGTGCTGCGCTGCTGGAGCACCACTCACGCGCATTGTGTCGCAATGTGCAGAAACGTTTCGCTTGCCGAAAGTGTCCGCAACGTTTCCGCTGGAAGGCGAACTTCAAGGCGCACATGAACTCACATTGCGATCTGGGCATTGATGATGGCAAGCAGACACTTGCCACAAACTACGAATGCCTTGAGTGTAATCGAAGCTTTCAGATGCAAAAGGATCTCACGCGTCACATGTTCATGCACTCACGCGATTCCCCTGTTTTTAGCTGCCAGTGGTGTCCACGCAAATTCTATCGGCGCGGCAATCTGATGCAACACTTGGAGCGTCATGGCATTGCACAGCACGAGTTTGCCTATGCGGAAGCGCTCATCAGTGTGCATAAGTACGCGCATGGCAAAAAACAGATCATCTGCAAAATCTGCGACATGCATTTTGCGCGCATTGCGGACCTGCGCGCACATATACAGAACGCTCAGATGCAGCCAACACCGGACGGAGGCAAACAGCATCATGACTGCGATTCTATGCTGAACTACAGCATAACCAATCAATTGGGCTACGAACTGCATCTGGACGATTCCGAGACCGATGAAGAGACGAAGGCCGCAGGCGTGCCTGCGCTGTACACCTGCGACCTGTGCCAGTTGGTGTGCCGGCGTAAGCATGAACTTTTTCGGCATCAGCAGGCCATGCATAAGCTTGAGAAGATTACGCTGAAGTGCCCGCAGTGCGTTTTTAAAAGCGTTTCACAGCATTTGCTCGACTATCACATGCGCACACAGTGTGGCAACCAGCAGAAGCAATGCGTCTGCGAAAAGTGCAATCTGAAATTCATGTGGCAGGAGAATCTGAAACAACACGCACTGCTGCATCACGATGAGGCGCATAACGCAGTGGACGCTCTTGCGCAAGCAACGCCGAACTCGAATGCAGACGAGGAACACAAGAAACAGATCTTTCAGTGTGGACAGTGTCCTTGCAAATACAATCGCAAGGACCGTTTAAGTGCGCACATAAAGAAAATGCACAGAGATGGCACTCCAGGGAACGCCGGCTCCAGTCGTAAAGCTGCCAATACGACACCGCTCACGGCCGAGGAGCAACTAAGAAAGGCCGATGGCAAGCGTTTCCTTTGCGCTTTTTGCGGCAAGGCGGTTAGCTCCTCATCGAATCTCATCATACACATGCGTCGGCATACAGGCGAGAAACCGTTTAAATGCGACTTCTGCGAAATGGCCTTCGCGCGTTCCTCCGACATGCAATGCCACCGGCGAACGCACACGGGCGAGCGACCGTATCAGTGCACTGTGTGCGAGAAGGCGTTCTCGCGATCGTACAAGCTGCATCAGCACATGCGCATACACAACGGCGAGCGGCCGTACAAGTGCACCTACTGCGAGAAGAGCTTCACGCAGTCGAACGATCTGACGCTGCACATACGTCGTCACACGGGCGAGCGGCCGTATGTGTGCGGCATCTGTGGCGAGCGATTCATACAGGGCACAGCACTGAAAAACCATCGTATTATGCGCGGCCATTTCGAGGAGGTGAAGCAGCCCGCCAGGCGTACCCTTTTGGAACAGTTTCCTGTTAGCTAA
- Protein Sequence
- MHSDKLETSALCRTCEVAGGVQLIKASSRNEKHPEKTLSDMLLDLAKIDLSAEHAESLPQQLCVTCAHKLKNAYDFVLQAQQVNQKLVASLLEVSKENLDCLLEAPIDITSHEFLQIKMEVDGSEESATTATATTYFTPTAVEAADDAEMNTESGTLKDELIDSDNEDDWRLSDDAGREPHLVDKCSSSGEGIDKAHLSGSRRLRRSMRKPPGKRKPGKQRKIENETASEDISESERLHVPLKPRRRGRPRKSERNANNEGRYVCDICGKTFAWHKDVQRHAKSHRTEASFVCDCCGKGFQRKDKYMDHMRKHKSGNDVKAKRRTNFSGRLYSTKRFKLLECRLCAVTCGKMQDLLDHLMLHRNIDTLENLTMDNVVIKEFFGNGTIKLNEVKEAVSEDIAALSLNKYCQVLNQYGYEMSIDDSDEECTTADVKYVCELCGENFSRKYQILAHAQEKHKHDTLPYRCNVCKLVFASELFYEQHTKTQCRNRDKKYKCMRCPGKFMWAENLEQHQCADNVKRLKNFDDDKDITESKEDTEELELSFALQSGGEGNKYKCCLCNSTNFGRLKQLRKHLLLHQDGHTQVDVVNGAYFKSYHPTGCAGRETELTMQIATDFATQDYARYYAAISVNGVELDLYDSESSTDNTDDEVADEPGVKSLYICGICGEACQRREHLLSHQESQHSDLQQLTNVCQKCRKQFVCTELLEQHQLRDCLNRHKRYQCEKCDERFVWLENLESHNIIRHNIYSEKPQDKLAKKLKCDLCEKTFIWPKDLTRHKRAHLPNTEKYECPYCERKFLRKDNMQSHIKVHSEEAKRCKPIKVKNVDAHLCKPHGYKRIQCMICHTNHRKIADLRMHLATHRYGVQFSADGDTMEAIVQALYPDEELHLKQEELIERIMEDVTREQYDRFYSITNEAGYELSLDSTETETDSETEYESNTTKATFHKYMCEVCLSVGFHRKYQLYAHQQQQHQWQEAAYSCALCQARFISAALLEHHSRALCRNVQKRFACRKCPQRFRWKANFKAHMNSHCDLGIDDGKQTLATNYECLECNRSFQMQKDLTRHMFMHSRDSPVFSCQWCPRKFYRRGNLMQHLERHGIAQHEFAYAEALISVHKYAHGKKQIICKICDMHFARIADLRAHIQNAQMQPTPDGGKQHHDCDSMLNYSITNQLGYELHLDDSETDEETKAAGVPALYTCDLCQLVCRRKHELFRHQQAMHKLEKITLKCPQCVFKSVSQHLLDYHMRTQCGNQQKQCVCEKCNLKFMWQENLKQHALLHHDEAHNAVDALAQATPNSNADEEHKKQIFQCGQCPCKYNRKDRLSAHIKKMHRDGTPGNAGSSRKAANTTPLTAEEQLRKADGKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCEMAFARSSDMQCHRRTHTGERPYQCTVCEKAFSRSYKLHQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRIMRGHFEEVKQPARRTLLEQFPVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -