Snig005480.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- lov
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010002271.1:198925-212197[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-18 1.5e-14 53.5 0.0 2 44 857 899 856 900 0.94
Sequence Information
- Coding Sequence
- ATGTTAAAGGACAACGAAGCGCTGATCAAGCGAAACCATACTCCACAGAAGGGAACACACGCTTTGCATATGACCGAGTACAGCCGCGAGCCAGCGCCAGTGCCGCTGTTGGCCAAAGCGACCAGCATAGATACTGTCCCAAACGCCTCGGCTACGCCGCCAATCACGCCACCCACGCCACCCGCATTGAACATGGCTAACCATCACAGAGGCGCATCGCCGGCGCCAATATCAGTGCATAACAGCACACCTGCCACGCCCACATCCACGAATGCGAGCAACGCGAACATAGCGACCCCTCTGTCCCACACACTGCAGACCCAAGCGCAGACACACTCCACAGCCACGAATATCACGACTCCCGGTGGCATGGGTATCGGCGTTGGCATTGGTGTTGGCGTAGGGGTTGGAGCGTTGCAGGATCACTACAGTCTACGTTGGAATAATCATCAGAATCATATATTACGTGCATTCGATGCGCTGCTGCAGACAAAGACGCTCGTCGATGTGACGCTCGTGTGTGCCGAGACGAGCATACGCGCACACAAAATGGTCCTCTCCGCCTGTTCCCCGTTCTTTCAGCGTGTCTTCGCCGAGACACCGTGCAAACATCCCGTCATCGTGCTGAAGGATTTTCGCGGTTGGGTCGTGCAGGCCATCGTGGATTTTATGTACAGGGGAGAGATAAGTGTGCCGCAAGAGCGACTGCAAACACTCATACAGGCAGGTGAATCACTGCAGGTCCGTGGTCTAGTGGAGAGTTCGGTACCGGAGCATACGCCGACGCCTGCTGCATCACCAGATGATTTTGGTATGTTGGATACGTCGTTGCTCAGTTCGGAGTTGGAACGCTGCTCTAGCTATGACGACGAATCCCCCTCCATGGTCACCGCAGGCTCCAAGTTAATCATGCCTTCACGGCTTTTTGGTACGActacgatgacgatgacaacacACATGCGTCGCACACATGAACGTAAGCgtgaacgcgaacgcgaacgtgAGGAGCGTGAAAGCGAGCGTGAACTGGCCGAGAGTAGTGACCAGGAGTTGCAAGGCGCCGAGCTATGTACATCTCCCATGCCCAGGCGTAAGCAGGCGCGACCGCGAAGACGATCGGGTGAACTGCCTCATGATTTCCAGGACTTGGCAGTGCCGACATCAAAGTTAGATGGGGAGAGTGAACCAGTAGAAAAAGAGCAAGAACAACATGAATTGGTCGACTTGCAGGTCAAGCAGTTGGCCGCATTGCAAACTGTGATTAAGAGCGAATTAATAGATGAACCCATGTTGGATGAGGACGAGGGTGGTGGCGACGGCGATGTGGATGGGGGTGATGAGGACGCAGCCCACGACGGTAATCCAACCGATTTGCATTGCGAACGTGATAGTGGTACGGGAAATGACAGTCGTGAACATAATGAGGCAACACAGGAAAAGGAAAGGGATGACAAAAAGGAGCAGCAAGACGATGAAAACACATTAGGCGATTCGTCCGATGATGAGCCATTGCTCTCGGCAGAAGAGCTACACACACATAGTACAGAAGACATCGAAGAGCTGATTAGCAATACGAATGCGCTCCAACGTAAAGCCGCACAATCGCCCTGCAATTCCGACGGTCCAGAGGATCTGTGCACTACGAAGAAGGACGTGCATAATGATACCAGCGAGCATCACTCTACTTCGGTTTCGGACAACGAGTGCAGTCCTgtgaataataacaacaacagcaacaaactcAAGGATAACAATCAACGCATTGTGCTGTCACTCAAGGACATACGGCACCTGAATAAGCCCAGCTCAAGCTCAACGCCCAATTCGAACTCAAACAACCCATTTGCCGGCACCAGCTTACGTGATCTGCGACTAGAACGCACTGCCGAAAGTCCCTGCAACATGGAAACGCTGGAAGCTCAAATGCATGCTGCAGCCGCAGCTGCGGTAGCTGCTGCCAGTGCTGGCGCCGACAATCCCTTTCACCACATGGAACACCAAATGGATCTCTCCCTAGCTGCTGCGGCCGCAGCGGCAGCCGTGTCACATCAACACTCCCGCGAACGAGAACACGCTTTTCGAGAACGTGAACTGCAGCATCAACACAATGCTTTTGCGAATAGTCTACTGGGTCCAATGGGTATGCCCCCATTTGGTCCCGGGGGCGGTGGTCCGAATGGTGTACCTGGTCAGGCGCCTCACGAACGCCTTGAGGAAAGCATGAATCGATTAAGCAAAGAGTTCGGCAAGGAATTCGGACCCAGCTCTCCGATGAGTCTACCCTCCCATTTCAATCCACCGGATGGGCCACCACATCCGCCATCGCCGTTGCCGTTTCCTGGGATGTCGTCGGCGCTGACGCTAACGCCACCACACATGTTTGGCTTGGACTCGCCACTTGGACTCTTTCCGCCCGGCATCGATCCAGGCAAACTCTACAATCCACTCATGGAAATGAGCGACCCGCGTGATATGCCCGGTGGACCACCGCCATttctgaaaaagaaaaTGCCACGGCCCAAGGGTCAGCATTCGGCGCCACGCGGCGGCCCGCCGCGCTCGTGGACCAACTCCGAGCTAACCGAAGCGCTGCAACATGTGTGGAACAAGAAGATGACCACCTCGCAGGCGTCGCGCATCTTTGGCATACCCTACAATTCGCTGCTCATGTATGTGCGCGGCAAGTACGGCAAAAGCCTGAAACTGGAGCAGCTGCGCAAGGACTGCATCAGCGGACCACCGCTGGAGATGCTGCAGATGGGCATAAGCAGCAACTCCAATGCGAACTCGAGCAAGAGCGAGAAGCACAAGGAGCGCAAGGAACGTGACAAGGACAAATCGTCGGCAGCCGGCAGCGTGGGTGGCGGCGTCGATATGCCTGGCGGGCCGCCCGGCTTGAGCGCACTCGATATGGAGGGACTCGGCTTGGGCCCCATGCCCGGCTCACACCCGGGGGGGCCTCGCAGCGCCAGCTCAGAGCCCGAGCTGCTTGGTGGTCCAGGCGGACTCTTCAACCCCTTCAATCCGCAAGGCTTCTACACAGACTTCCCCGGCGGCTTTCCCGGCCTGCCGCTGAGCATGTTAAACCTGTTGCCACCTTCGGAACGACATCAGCACGCGGCCGCCGCGGCTGCTATGCACCAGCACATGGCGGCTGCCGGCATGGACGAGGATTGCAAATCAGATCGCTCGAAGCAGTCCTCCTCCCTGGATGATGATGGCTTTGCGGGGCCACTTGCGCTGAACCGTGAGGAGCAACGGCGCAGCAGCGAACTTTTGGCGGCGGCTGCGGCGGCAGCGGGCATGGGCCCGTCTCCCAATGGGCCCTTGTCGGCGCAGCAGAACGGCGGCGCGACGCAAGAGTGA
- Protein Sequence
- MLKDNEALIKRNHTPQKGTHALHMTEYSREPAPVPLLAKATSIDTVPNASATPPITPPTPPALNMANHHRGASPAPISVHNSTPATPTSTNASNANIATPLSHTLQTQAQTHSTATNITTPGGMGIGVGIGVGVGVGALQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQERLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLDTSLLSSELERCSSYDDESPSMVTAGSKLIMPSRLFGTTTMTMTTHMRRTHERKREREREREERESERELAESSDQELQGAELCTSPMPRRKQARPRRRSGELPHDFQDLAVPTSKLDGESEPVEKEQEQHELVDLQVKQLAALQTVIKSELIDEPMLDEDEGGGDGDVDGGDEDAAHDGNPTDLHCERDSGTGNDSREHNEATQEKERDDKKEQQDDENTLGDSSDDEPLLSAEELHTHSTEDIEELISNTNALQRKAAQSPCNSDGPEDLCTTKKDVHNDTSEHHSTSVSDNECSPVNNNNNSNKLKDNNQRIVLSLKDIRHLNKPSSSSTPNSNSNNPFAGTSLRDLRLERTAESPCNMETLEAQMHAAAAAAVAAASAGADNPFHHMEHQMDLSLAAAAAAAAVSHQHSREREHAFRERELQHQHNAFANSLLGPMGMPPFGPGGGGPNGVPGQAPHERLEESMNRLSKEFGKEFGPSSPMSLPSHFNPPDGPPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNSELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLEMLQMGISSNSNANSSKSEKHKERKERDKDKSSAAGSVGGGVDMPGGPPGLSALDMEGLGLGPMPGSHPGGPRSASSEPELLGGPGGLFNPFNPQGFYTDFPGGFPGLPLSMLNLLPPSERHQHAAAAAAMHQHMAAAGMDEDCKSDRSKQSSSLDDDGFAGPLALNREEQRRSSELLAAAAAAAGMGPSPNGPLSAQQNGGATQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01364030;
- 90% Identity
- iTF_01364030;
- 80% Identity
- iTF_01364030;