Snig016029.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- lola
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005350.1:507473-511367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-19 4.6e-16 58.4 0.0 2 45 551 595 550 595 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGCAACAATTTTGCTTACGTTGGAATAATCACCAGCCGAATTTTATTTCGGTCTGTTCATCGCTATTGCACAATGGCACGCTAGTGGATGTTACGCTTGCAGCCGAGGGTCGGCAACTGCAAGCTCACAAAATAGTGCTTTCGGCATGTAGCTCTTATTTTCAGActttatttacaacaaatcCATGTCAACATCCGATTGTCATACTGAAAGATGTACAGTACGATGATCTCAAAACCATGGTAGATTTTATGTACTACGGTGAAGTAAATGTATCGCAAGAACAGTTGCCACATATTCTTAAAACAGCAGAGATGCTCAAGATCAAAGGTCTTGCTGAGATGCCAACGGATCCAGCCAATCTGACCAAATCAGATAATAAATCTTTAAACGAAGGGGCAGAGCTCGTTGGCAGTCATGGTCAAAGTGGCACAAGCACAGCAAGTAACGCTGCTGGTTTAGGAAGCAGCACGAGTGGCAGTGTAAACGACTCCATATGGGGTGGAACTGAAGCTCaatttcagcaacaacaacaaacacaacaacaacaacatcagcaacatgctcagcagcatcaacaacatcaccatcatcaccaccatcaacaacaacagcaaaacaatagCAGCCAATCGCAAACTACTCAGGGGCATCATCAACTTAGACGTACACCATCTCCTTTGGGTGCAGGAACCTCTCCTGCCACGCGGCGGAAGCGTTTGCGCAAGTCTTCTAACAACGgcTCTGGAGATCGTACTAATACTGACGATCAGCATAATTCTTTGGAGGCGACTAATTCGCACGGTGGAATCAGTCTTTCTCAAATGTCTTTTGGAACTGGTGCAGGAACAGCGCTTAGCAATGTTACTGGCCACTCTTTGCATACGAACAAGCTAATAAAGGATTCAACTAACGCTGACTTAGAACAAACTCCACATGATTCAGATTTGGAGGACGGTCATGGACATATTCACATACAAAttaAACCAGAAGTTGATATAAGTGGCGTTAATCAATCAATGCCTTTAGACATTTCTGGCGCTACAACACCTTCGGAGCACGATGCCCCTAATTCTCAGTCATCACACTCTGGTCTTCAATGGACGGTTGTTGATTCAAATTATTCACGATTTTCACTGCCTGCCTGTCAGCCAAATCTAATTAGCAACAGTTCCGGCGGCAGTAATCCTAGTGCAAGTAGTGGTGCCAGTGGCAACGGGGGTACCTCCGatcaacgacagcagcaagaaGGTCAACATGGAagtagccaacaacaacaacatcatcatttgcaacaattgcattaccaacaacaacagcaccaacagcaacaacaaggcaCCCCAGGGGCTGCTTACTCGTCTCAGATTGTAACAGTGAATAACCTAGTCAGTGGATATActacagcagcacaaaatcTTTCGCCGCCATCACCAAATGATTCAAACCTGGTACAATCAGTGTATAGTCAGGGCCCATCTCCCACACAATCTCCTGTGCACACGGGTATTGGGGGTGGAGGAAACAGTTGCACAAATTCAGGAGCGACTAGTGGTGGCACTGGCGCTGGTTGTGGTGCCAATGGAAACGGATCAACCGTCAGTCAAGTTGTCAAGCGTAAACGTTCAGTTAATCCACAAGGTGATGAAAATTTTATACGCGCTTTAGAAGCGGTTCGTTCCGGCGGTATTGGCTTCTGTAAAGCAGCACGTTTGTATGGTGTCAACAATCGTACACTTTGGTTGGAGTACAAAAAACGTGGATATCCTGTCTCAAGACCTAGCATCAAAGCACGTGTGGTAAAACAAGAACCGAATCTCTCGCCCTCACCGACACCACCGACTAACCCGGGGGATGATAATACTAACGAAAACTATGAACATTTAACAGCTGCCGCTGTGGCGGCAGCTCAGACAGCAGCCCTTAACATGCAAATACCACCCCAGTCGGAAACTCCCACACCATCACTAATGTGTGCCCCGCACCATACGGCTGGAACATCAACACCAACTGGGACTAGTGGTACAGGAGCACACCCTGCTATGGGCGTAATGAGTTTTTTAGATACACGACACATGGATTTTCCTGCTAGTTTGCATACTATGTCTCGTCAAAGATACATCGATGCGACAGGTGCTAGCACAGCAGCCACCAGTACAGGTGCTGGCACGATAAATGTTAATCCGGCAGCTGCAATGAACCTTCAAAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDNKSLNEGAELVGSHGQSGTSTASNAAGLGSSTSGSVNDSIWGGTEAQFQQQQQTQQQQHQQHAQQHQQHHHHHHHQQQQQNNSSQSQTTQGHHQLRRTPSPLGAGTSPATRRKRLRKSSNNGSGDRTNTDDQHNSLEATNSHGGISLSQMSFGTGAGTALSNVTGHSLHTNKLIKDSTNADLEQTPHDSDLEDGHGHIHIQIKPEVDISGVNQSMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYSRFSLPACQPNLISNSSGGSNPSASSGASGNGGTSDQRQQQEGQHGSSQQQQHHHLQQLHYQQQQHQQQQQGTPGAAYSSQIVTVNNLVSGYTTAAQNLSPPSPNDSNLVQSVYSQGPSPTQSPVHTGIGGGGNSCTNSGATSGGTGAGCGANGNGSTVSQVVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPPTNPGDDNTNENYEHLTAAAVAAAQTAALNMQIPPQSETPTPSLMCAPHHTAGTSTPTGTSGTGAHPAMGVMSFLDTRHMDFPASLHTMSRQRYIDATGASTAATSTGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01364018;
- 90% Identity
- iTF_01364018;
- 80% Identity
- iTF_01364018;