Snig016032.1
Basic Information
- Insect
- Stegana nigrithorax
- Gene Symbol
- -
- Assembly
- GCA_037044495.1
- Location
- JBAMBQ010005350.1:516874-518478[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-13 3.1e-10 39.7 0.0 3 41 340 378 339 381 0.91 2 3 0.011 20 5.1 0.0 27 37 411 421 407 426 0.89 3 3 6.8e-19 1.2e-15 57.0 0.0 3 41 449 487 447 490 0.93
Sequence Information
- Coding Sequence
- ATGGGTCATGCCGGCACAATATTGGAGATCAATCGAGCTTTGCGCGAAGAAACCCACAGCTGCGAAGTTACACTAGTGGCTAAGGACGGAAATGCGGTCCGGGCACATCGCTTTGTACTTAGTACATGTAGCGATTTGATGCGCAGTGTTTTATTGGATGTGCCTCATGGTCAGGAGTGCACTATTATCTTGCCGGAGATTAATGGAATTCTTTTAGAAAGtatgctttcttttatttacgtTGGTGAAACTAGCCTTCCTTCAAGTAGCCTCACGGAGTTCCTTGAGGCTATAAATTTATTAGGAATAAAGTCAGCTATAAGTTTTGAGTGTAGTGCGGCAAATGTGAATGTAAACAACAGCGGTACTTCGACTGTAAACTCTGACACAATAAGTGGATCCACAATCAATGTAAAATCTATCAACGGCCTCCAAATAACGCAAGAAGATCTGATTGAGGAAGAAAACGGAGTAATTGAAAAGATCGTTACCAACAGCGTTATATCAGAACACCCAACAGCAGCTTCACGCGAATTGGAATTTCTTGACGTGtacaacgaacaacaaaagatCACATATTCTATTGAGCACATGGCCGGCGCGGGTGGTGGTGGTGAATTCATTTTgacagaaaacgaaaatacatTTACGATAACCCAAGCTCATCCAAGTGGCAAACTACCTAATACAGCAACCCCACAGGTTGTGGAGAACTCTGAACTGGTTGAGGAAGATAATGATGGCGAAGATGATTCAAATATAATCGAAGAGGAGTATAATAATACCGCGGAACCACTTATTGAACTGGCGGCCAATTCAGATATTGTAGGAGAAACCACGACTCATATAGGGGATTCTACAGAATCTCAACTTCTGGAAGCAGCAAAGTCTAGcttaaagctaaaaaatattaagatgAAGAGCGTTCCAATACATGGAAAGCGCAATATCACCAGCAATAGTTCGTATGCTTGTAGTGCTAAGACAAAATGTAAATCTAAGAATCCTATTGAAGTTGACAACTTAGAGATGGCCGCTCAAGCTGTTCTTGTTGAAGGGCTAAGCCTCCAGAAAGCTGCTGATAAGTTCGACATTTCTAAAACTGTTCTTTGGCGTCGTATGCGAAAAGATCCGGCGTACACTAAGAGCGGACGCGAAAAACCTTCGCTATCGCTTGCCTACGAACGTTTAAAAAGCGGCGACTCCTTGAAAAATATCAGTAAGGACTTGGACATCCCTATGTCAACGCTGCATCGGCACAAGGTGCGTTTATCTCAGGAAGGTAGGTTGCCCCAATATTTGGCAAGTCGCCGGCGAGACTCCACTCCAAAAGATGAGCTTCaagaaaaacttgcaaaaGCTGTGCACGCTTGTATACATGAAGGTATGTCGCAAAACCATGCTGctaatatatttgaaataccGAAAAGCACGTTGTGGAGGCATCTGCGTCGACGTGTAGCGGATTCAGAGCATACTTCCGAGTACTCTAATTCGCATAACCTTGATTCAACTCAAATCAAAGAAGAAGTTATTTTGTCTTAA
- Protein Sequence
- MGHAGTILEINRALREETHSCEVTLVAKDGNAVRAHRFVLSTCSDLMRSVLLDVPHGQECTIILPEINGILLESMLSFIYVGETSLPSSSLTEFLEAINLLGIKSAISFECSAANVNVNNSGTSTVNSDTISGSTINVKSINGLQITQEDLIEEENGVIEKIVTNSVISEHPTAASRELEFLDVYNEQQKITYSIEHMAGAGGGGEFILTENENTFTITQAHPSGKLPNTATPQVVENSELVEEDNDGEDDSNIIEEEYNNTAEPLIELAANSDIVGETTTHIGDSTESQLLEAAKSSLKLKNIKMKSVPIHGKRNITSNSSYACSAKTKCKSKNPIEVDNLEMAAQAVLVEGLSLQKAADKFDISKTVLWRRMRKDPAYTKSGREKPSLSLAYERLKSGDSLKNISKDLDIPMSTLHRHKVRLSQEGRLPQYLASRRRDSTPKDELQEKLAKAVHACIHEGMSQNHAANIFEIPKSTLWRHLRRRVADSEHTSEYSNSHNLDSTQIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01364049;
- 90% Identity
- iTF_01364049;
- 80% Identity
- iTF_01364049;